MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation
MRtrix3 is an open-source, cross-platform software package for medical image processing,
analysis and visualisation, with a particular emphasis on the investigation of the brain using …
analysis and visualisation, with a particular emphasis on the investigation of the brain using …
Machine learning for precision psychiatry: opportunities and challenges
The nature of mental illness remains a conundrum. Traditional disease categories are
increasingly suspected to misrepresent the causes underlying mental disturbance. Yet …
increasingly suspected to misrepresent the causes underlying mental disturbance. Yet …
The OpenNeuro resource for sharing of neuroscience data
The sharing of research data is essential to ensure reproducibility and maximize the impact
of public investments in scientific research. Here, we describe OpenNeuro, a BRAIN …
of public investments in scientific research. Here, we describe OpenNeuro, a BRAIN …
fMRIPrep: a robust preprocessing pipeline for functional MRI
Preprocessing of functional magnetic resonance imaging (fMRI) involves numerous steps to
clean and standardize the data before statistical analysis. Generally, researchers create ad …
clean and standardize the data before statistical analysis. Generally, researchers create ad …
Open science challenges, benefits and tips in early career and beyond
The movement towards open science is a consequence of seemingly pervasive failures to
replicate previous research. This transition comes with great benefits but also significant …
replicate previous research. This transition comes with great benefits but also significant …
Singularity: Scientific containers for mobility of compute
Here we present Singularity, software developed to bring containers and reproducibility to
scientific computing. Using Singularity containers, developers can work in reproducible …
scientific computing. Using Singularity containers, developers can work in reproducible …
[HTML][HTML] Optical imaging and spectroscopy for the study of the human brain: status report
This report is the second part of a comprehensive two-part series aimed at reviewing an
extensive and diverse toolkit of novel methods to explore brain health and function. While …
extensive and diverse toolkit of novel methods to explore brain health and function. While …
MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites
Quality control of MRI is essential for excluding problematic acquisitions and avoiding bias
in subsequent image processing and analysis. Visual inspection is subjective and …
in subsequent image processing and analysis. Visual inspection is subjective and …
Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects
Abstract The Human Connectome Projects in Development (HCP-D) and Aging (HCP-A) are
two large-scale brain imaging studies that will extend the recently completed HCP Young …
two large-scale brain imaging studies that will extend the recently completed HCP Young …
QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data
Diffusion-weighted magnetic resonance imaging (dMRI) is the primary method for
noninvasively studying the organization of white matter in the human brain. Here we …
noninvasively studying the organization of white matter in the human brain. Here we …