Synthetic chromosomes, genomes, viruses, and cells

JC Venter, JI Glass, CA Hutchison, S Vashee - Cell, 2022 - cell.com
Synthetic genomics is the construction of viruses, bacteria, and eukaryotic cells with
synthetic genomes. It involves two basic processes: synthesis of complete genomes or …

Rewriting the genetic code

T Mukai, MJ Lajoie, M Englert… - Annual review of …, 2017 - annualreviews.org
The genetic code—the language used by cells to translate their genomes into proteins that
perform many cellular functions—is highly conserved throughout natural life. Rewriting the …

Cell-free protein synthesis from genomically recoded bacteria enables multisite incorporation of noncanonical amino acids

RW Martin, BJ Des Soye, YC Kwon, J Kay… - Nature …, 2018 - nature.com
Cell-free protein synthesis has emerged as a powerful approach for expanding the range of
genetically encoded chemistry into proteins. Unfortunately, efforts to site-specifically …

Adaptive evolution of genomically recoded Escherichia coli

TM Wannier, AM Kunjapur, DP Rice… - Proceedings of the …, 2018 - pnas.org
Efforts are underway to construct several recoded genomes anticipated to exhibit multivirus
resistance, enhanced nonstandard amino acid (nsAA) incorporation, and capability for …

A guide to designing photocontrol in proteins: methods, strategies and applications

AC Kneuttinger - Biological Chemistry, 2022 - degruyter.com
Light is essential for various biochemical processes in all domains of life. In its presence
certain proteins inside a cell are excited, which either stimulates or inhibits subsequent …

Engineered mRNA–ribosome fusions for facile biosynthesis of selenoproteins

A Thaenert, A Sevostyanova, CZ Chung… - Proceedings of the …, 2024 - pnas.org
Ribosomes are often used in synthetic biology as a tool to produce desired proteins with
enhanced properties or entirely new functions. However, repurposing ribosomes for …

Iterative algorithm-guided design of massive strain libraries, applied to itaconic acid production in yeast

EM Young, Z Zhao, BEM Gielesen, L Wu… - Metabolic …, 2018 - Elsevier
Metabolic engineering requires multiple rounds of strain construction to evaluate alternative
pathways and enzyme concentrations. Optimizing multigene pathways stepwise or by …

Custom selenoprotein production enabled by laboratory evolution of recoded bacterial strains

R Thyer, R Shroff, DR Klein, S d'Oelsnitz… - Nature …, 2018 - nature.com
Incorporation of the rare amino acid selenocysteine to form diselenide bonds can improve
stability and function of synthetic peptide therapeutics. However, application of this approach …

Genetic code expansion in the engineered organism Vmax X2: high yield and exceptional fidelity

SS González, O Ad, B Shah, Z Zhang, X Zhang… - ACS central …, 2021 - ACS Publications
We report that the recently introduced commercial strain of Vibrio natriegens (Vmax X2)
supports robust unnatural amino acid mutagenesis, generating exceptional yields of soluble …

Native Aminoacyl-tRNA Synthetase/tRNA Pair Drives Highly Efficient Noncanonical Amino Acid Incorporation in Escherichia coli

ED Ficaretta, SJ Singha Roy, L Voss… - ACS Chemical …, 2024 - ACS Publications
Site-specific noncanonical amino acid (ncAA) mutagenesis in living cells has traditionally
relied on heterologous, nonsense-suppressing aminoacyl-tRNA synthetase (aaRS)/tRNA …