Association map** in plants in the post-GWAS genomics era

PK Gupta, PL Kulwal, V Jaiswal - Advances in genetics, 2019 - Elsevier
With the availability of DNA-based molecular markers during early 1980s and that of
sophisticated statistical tools in late 1980s and later, it became possible to identify genomic …

Integration of multi-omics technologies for crop improvement: status and prospects

R Zhang, C Zhang, C Yu, J Dong, J Hu - Frontiers in Bioinformatics, 2022 - frontiersin.org
With the rapid development of next-generation sequencing (NGS), multi-omics techniques
have been emerging as effective approaches for crop improvement. Here, we focus mainly …

Genome-wide differences in DNA methylation changes in two contrasting rice genotypes in response to drought conditions

W Wang, Q Qin, F Sun, Y Wang, D Xu, Z Li… - Frontiers in plant …, 2016 - frontiersin.org
Differences in drought stress tolerance within diverse rice genotypes have been attributed to
genetic diversity and epigenetic alterations. DNA methylation is an important epigenetic …

Physiological and de novo transcriptome analysis of the fermentation mechanism of Cerasus sachalinensis roots in response to short-term waterlogging

P Zhang, D Lyu, L Jia, J He, S Qin - BMC genomics, 2017 - Springer
Background Cerasus sachalinensis is widely used in cool regions as a sweet cherry
rootstock and is known for its sensitivity to soil waterlogging and waterlogging stress …

Transposon-mediated epigenetic regulation contributes to phenotypic diversity and environmental adaptation in rice

X Song, X Cao - Current Opinion in Plant Biology, 2017 - Elsevier
Highlights•Most rice genes are associated with transposable elements (TEs).•TE-based
epigenetic regulation of expression of adjacent genes is prevalent in rice.•Environmental …

Exploiting genic male sterility in rice: from molecular dissection to breeding applications

A Abbas, P Yu, L Sun, Z Yang, D Chen… - Frontiers in Plant …, 2021 - frontiersin.org
Rice (Oryza sativa L.) occupies a very salient and indispensable status among cereal crops,
as its vast production is used to feed nearly half of the world's population. Male sterile plants …

Comparative transcriptomic and evolutionary analysis of FAD-like genes of Brassica species revealed their role in fatty acid biosynthesis and stress tolerance

N Shaheen, UM Khan, A Farooq, UB Zafar, SH Khan… - BMC Plant …, 2023 - Springer
Abstract Background Fatty acid desaturases (FADs) are involved in regulating plant fatty
acid composition by adding double bonds to growing hydrocarbon chain. Apart from …

[HTML][HTML] Genome-wide analysis of DNA polymorphisms, the methylome and transcriptome revealed that multiple factors are associated with low pollen fertility in …

X Li, H Yu, Y Jiao, MQ Shahid, J Wu, X Liu - PLoS One, 2018 - journals.plos.org
Autotetraploid rice is a useful germplasm with high biomass production; however, low fertility
is the main barrier in commercial utilization. In our previous study, differential expression of …

Epigenetic regulation and epigenomic landscape in rice

X Deng, X Song, L Wei, C Liu, X Cao - National Science Review, 2016 - academic.oup.com
Epigenetic regulation has been implicated in the control of complex agronomic traits in rice
(Oryza sativa), a staple food crop and model monocot plant. Recent advances in high …

Genome-wide comparative transcriptome analysis of CMS-D2 and its maintainer and restorer lines in upland cotton

J Wu, M Zhang, B Zhang, X Zhang, L Guo, T Qi… - BMC genomics, 2017 - Springer
Background Cytoplasmic male sterility (CMS) conferred by the cytoplasm from Gossypium
harknessii (D2) is an important system for hybrid seed production in Upland cotton (G …