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Machine learning for functional protein design
Recent breakthroughs in AI coupled with the rapid accumulation of protein sequence and
structure data have radically transformed computational protein design. New methods …
structure data have radically transformed computational protein design. New methods …
Opportunities and challenges for machine learning-assisted enzyme engineering
Enzymes can be engineered at the level of their amino acid sequences to optimize key
properties such as expression, stability, substrate range, and catalytic efficiency─ or even to …
properties such as expression, stability, substrate range, and catalytic efficiency─ or even to …
Machine learning-guided protein engineering
Recent progress in engineering highly promising biocatalysts has increasingly involved
machine learning methods. These methods leverage existing experimental and simulation …
machine learning methods. These methods leverage existing experimental and simulation …
Sourcing thermotolerant poly (ethylene terephthalate) hydrolase scaffolds from natural diversity
Enzymatic deconstruction of poly (ethylene terephthalate)(PET) is under intense
investigation, given the ability of hydrolase enzymes to depolymerize PET to its constituent …
investigation, given the ability of hydrolase enzymes to depolymerize PET to its constituent …
Embracing data science in catalysis research
Accelerating catalyst discovery and development is of paramount importance in addressing
the global energy, sustainability and healthcare demands. The past decade has witnessed …
the global energy, sustainability and healthcare demands. The past decade has witnessed …
Machine learning-enabled retrobiosynthesis of molecules
Retrobiosynthesis provides an effective and sustainable approach to producing functional
molecules. The past few decades have witnessed a rapid expansion of biosynthetic …
molecules. The past few decades have witnessed a rapid expansion of biosynthetic …
De novo protein design by deep network hallucination
There has been considerable recent progress in protein structure prediction using deep
neural networks to predict inter-residue distances from amino acid sequences,–. Here we …
neural networks to predict inter-residue distances from amino acid sequences,–. Here we …
Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences
In the field of artificial intelligence, a combination of scale in data and model capacity
enabled by unsupervised learning has led to major advances in representation learning and …
enabled by unsupervised learning has led to major advances in representation learning and …
Utilizing graph machine learning within drug discovery and development
Graph machine learning (GML) is receiving growing interest within the pharmaceutical and
biotechnology industries for its ability to model biomolecular structures, the functional …
biotechnology industries for its ability to model biomolecular structures, the functional …
Transformer protein language models are unsupervised structure learners
Unsupervised contact prediction is central to uncovering physical, structural, and functional
constraints for protein structure determination and design. For decades, the predominant …
constraints for protein structure determination and design. For decades, the predominant …