Implementation and acceleration of optimal control for systems biology

JA Sharp, K Burrage… - Journal of the Royal …, 2021 - royalsocietypublishing.org
Optimal control theory provides insight into complex resource allocation decisions. The
forward–backward sweep method (FBSM) is an iterative technique commonly implemented …

A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

J Liepe, P Kirk, S Filippi, T Toni, CP Barnes… - Nature protocols, 2014 - nature.com
As modeling becomes a more widespread practice in the life sciences and biomedical
sciences, researchers need reliable tools to calibrate models against ever more complex …

Influence of bone marrow microenvironment on leukemic stem cells: breaking up an intimate relationship

P Agarwal, R Bhatia - Advances in Cancer Research, 2015 - Elsevier
The bone marrow microenvironment (BMM) plays a critical role in hematopoietic stem cells
(HSCs) maintenance and regulation. There is increasing interest in the role of the BMM in …

HSC niche dynamics in regeneration, pre-malignancy, and cancer: insights from mathematical modeling

RK Pedersen, M Andersen, V Skov, L Kjær… - Stem Cells, 2023 - academic.oup.com
The hematopoietic stem cell (HSC) niche is a crucial driver of regeneration and malignancy.
Its interaction with hematopoietic and malignant stem cells is highly complex and direct …

Mimicking the acute myeloid leukemia niche for molecular study and drug screening

M Houshmand, M Soleimani, A Atashi… - … Engineering Part C …, 2017 - liebertpub.com
Bone marrow niche is a major contributing factor in leukemia development and drug
resistance in acute myeloid leukemia (AML) patients. Although mimicking leukemic bone …

The ecology in the hematopoietic stem cell niche determines the clinical outcome in chronic myeloid leukemia

AL MacLean, S Filippi, MPH Stumpf - … of the National Academy of Sciences, 2014 - pnas.org
Chronic myeloid leukemia (CML) is a blood disease that disrupts normal function of the
hematopoietic system. Despite the great progress made in terms of molecular therapies for …

Optimal control of acute myeloid leukaemia

JA Sharp, AP Browning, T Mapder, K Burrage… - Journal of theoretical …, 2019 - Elsevier
Acute myeloid leukaemia (AML) is a blood cancer affecting haematopoietic stem cells. AML
is routinely treated with chemotherapy, and so it is of great interest to develop optimal …

Concise review: stem cell population biology: insights from hematopoiesis

AL MacLean, C Lo Celso, MPH Stumpf - Stem Cells, 2017 - academic.oup.com
Stem cells are fundamental to human life and offer great therapeutic potential, yet their
biology remains incompletely—or in cases even poorly—understood. The field of stem cell …

Designing combination therapies using multiple optimal controls

JA Sharp, AP Browning, T Mapder, CM Baker… - Journal of Theoretical …, 2020 - Elsevier
Strategic management of populations of interacting biological species routinely requires
interventions combining multiple treatments or therapies. This is important in key research …

[HTML][HTML] A mathematical model of the transition from normal hematopoiesis to the chronic and accelerated-acute stages in myeloid leukemia

LG Parajdi, R Precup, EA Bonci, C Tomuleasa - Mathematics, 2020 - mdpi.com
A mathematical model given by a two-dimensional differential system is introduced in order
to understand the transition process from the normal hematopoiesis to the chronic and …