A brave new world of RNA-binding proteins

MW Hentze, A Castello, T Schwarzl… - Nature reviews Molecular …, 2018 - nature.com
RNA-binding proteins (RBPs) are typically thought of as proteins that bind RNA through one
or multiple globular RNA-binding domains (RBDs) and change the fate or function of the …

The maternal-to-zygotic transition revisited

NL Vastenhouw, WX Cao, HD Lipshitz - Development, 2019 - journals.biologists.com
The development of animal embryos is initially directed by maternal gene products. Then,
during the maternal-to-zygotic transition (MZT), developmental control is handed to the …

Transcription organizes euchromatin via microphase separation

L Hilbert, Y Sato, K Kuznetsova, T Bianucci… - Nature …, 2021 - nature.com
In eukaryotes, DNA is packed inside the cell nucleus in the form of chromatin, which consists
of DNA, proteins such as histones, and RNA. Euchromatin, which is permissive for …

RNA methylation in mammalian development and cancer

P Song, S Tayier, Z Cai, G Jia - Cell Biology and Toxicology, 2021 - Springer
Similar to epigenetic DNA and histone modifications, epitranscriptomic modifications (RNA
modifications) have emerged as crucial regulators in temporal and spatial gene expression …

[HTML][HTML] Ythdf m6A readers function redundantly during zebrafish development

C Kontur, M Jeong, D Cifuentes, AJ Giraldez - Cell reports, 2020 - cell.com
During the maternal-to-zygotic transition (MZT), multiple mechanisms precisely control
massive decay of maternal mRNAs. N 6-methyladenosine (m 6 A) is known to regulate …

Transcriptome-wide discovery of coding and noncoding RNA-binding proteins

R Huang, M Han, L Meng… - Proceedings of the …, 2018 - National Acad Sciences
Transcriptome-wide identification of RNA-binding proteins (RBPs) is a prerequisite for
understanding the posttranscriptional gene regulation networks. However, proteomic …

Computational prediction and experimental validation identify functionally conserved lncRNAs from zebrafish to human

W Huang, T **ong, Y Zhao, J Heng, G Han, P Wang… - Nature Genetics, 2024 - nature.com
Functional studies of long noncoding RNAs (lncRNAs) have been hindered by the lack of
methods to assess their evolution. Here we present lncRNA Homology Explorer (lncHOME) …

Discovering the RNA-binding proteome of plant leaves with an improved RNA interactome capture method

M Bach-Pages, F Homma, J Kourelis, F Kaschani… - Biomolecules, 2020 - mdpi.com
RNA-binding proteins (RBPs) play a crucial role in regulating RNA function and fate.
However, the full complement of RBPs has only recently begun to be uncovered through …

Compartmentalization and metabolic regulation of glycolysis

GG Fuller, JK Kim - Journal of cell science, 2021 - journals.biologists.com
Hypoxia inhibits the tricarboxylic acid (TCA) cycle and leaves glycolysis as the primary
metabolic pathway responsible for converting glucose into usable energy. However, the …

miR-430 regulates zygotic mRNA during zebrafish embryogenesis

D Baia Amaral, R Egidy, A Perera, AA Bazzini - Genome Biology, 2024 - Springer
Background Early embryonic developmental programs are guided by the coordinated
interplay between maternally inherited and zygotically manufactured RNAs and proteins …