Open MPI: Goals, concept, and design of a next generation MPI implementation

E Gabriel, GE Fagg, G Bosilca, T Angskun… - Recent Advances in …, 2004 - Springer
A large number of MPI implementations are currently available, each of which emphasize
different aspects of high-performance computing or are intended to solve a specific research …

How to use MIGRATE or why are Markov chain Monte Carlo programs difficult to use

P Beerli - Population genetics for animal conservation, 2009 - cambridge.org
Population genetic analyses often require the estimation of parameters such as population
size and migration rates. In the 1960s, enzyme electrophoresis was developed; it was the …

Open MPI: A flexible high performance MPI

RL Graham, TS Woodall, JM Squyres - Parallel Processing and Applied …, 2006 - Springer
A large number of MPI implementations are currently available, each of which emphasize
different aspects of high-performance computing or are intended to solve a specific research …

The LAM/MPI checkpoint/restart framework: System-initiated checkpointing

S Sankaran, JM Squyres, B Barrett… - … Journal of High …, 2005 - journals.sagepub.com
As high performance clusters continue to grow in size and popularity, issues of fault
tolerance and reliability are becoming limiting factors on application scalability. To address …

Parallel calculation of CCSD and CCSD (T) analytic first and second derivatives

ME Harding, T Metzroth, J Gauss… - Journal of Chemical …, 2008 - ACS Publications
In this paper we present a parallel adaptation of a highly efficient coupled-cluster algorithm
for calculating coupled-cluster singles and doubles (CCSD) and coupled-cluster singles and …

Proactive process-level live migration in HPC environments

C Wang, F Mueller, C Engelmann… - SC'08: Proceedings of …, 2008 - ieeexplore.ieee.org
As the number of nodes in high-performance computing environments keeps increasing,
faults are becoming common place. Reactive fault tolerance (FT) often does not scale due to …

Parallelization of an Euler–Lagrange model using mixed domain decomposition and a mirror domain technique: Application to dispersed gas–liquid two-phase flow

D Darmana, NG Deen, JAM Kuipers - Journal of computational physics, 2006 - Elsevier
We report a parallel algorithm applicable to a Euler–Lagrange model embedding four-way
coupling. The model describing the dispersed phase dynamics accounts for bubble–bubble …

Speeding up parallel GROMACS on high‐latency networks

C Kutzner, D Van Der Spoel, M Fechner… - Journal of …, 2007 - Wiley Online Library
We investigate the parallel scaling of the GROMACS molecular dynamics code on Ethernet
Beowulf clusters and what prerequisites are necessary for decent scaling even on such …

[หนังสือ][B] Cloud computing and software services: theory and techniques

SA Ahson, M Ilyas - 2010 - books.google.com
Whether you're already in the cloud, or determining whether or not it makes sense for your
organization, Cloud Computing and Software Services: Theory and Techniques provides the …

Design and evaluation of Nemesis, a scalable, low-latency, message-passing communication subsystem

D Buntinas, G Mercier, W Gropp - Sixth IEEE International …, 2006 - ieeexplore.ieee.org
This paper presents a new low-level communication subsystem called Nemesis. Nemesis
has been designed and implemented to be scalable and efficient both in the intranode …