Proliferating active matter

O Hallatschek, SS Datta, K Drescher, J Dunkel… - Nature Reviews …, 2023 - nature.com
The fascinating patterns of collective motion created by autonomously driven particles have
fuelled active-matter research for over two decades. So far, theoretical active-matter …

Establishing a conceptual framework for holistic cell states and state transitions

SM Rafelski, JA Theriot - Cell, 2024 - cell.com
Cell states were traditionally defined by how they looked, where they were located, and what
functions they performed. In this post-genomic era, the field is largely focused on a …

Slide-tags enables single-nucleus barcoding for multimodal spatial genomics

AJC Russell, JA Weir, NM Nadaf, M Shabet, V Kumar… - Nature, 2024 - nature.com
Recent technological innovations have enabled the high-throughput quantification of gene
expression and epigenetic regulation within individual cells, transforming our understanding …

Diverse clonal fates emerge upon drug treatment of homogeneous cancer cells

Y Goyal, GT Busch, M Pillai, J Li, RH Boe, EI Grody… - Nature, 2023 - nature.com
Even among genetically identical cancer cells, resistance to therapy frequently emerges
from a small subset of those cells,,,,,–. Molecular differences in rare individual cells in the …

Clonal expansion and epigenetic inheritance of long-lasting NK cell memory

T Rückert, CA Lareau, MF Mashreghi, LS Ludwig… - Nature …, 2022 - nature.com
Clonal expansion of cells with somatically diversified receptors and their long-term
maintenance as memory cells is a hallmark of adaptive immunity. Here, we studied …

Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states

R Chaligne, F Gaiti, D Silverbush, JS Schiffman… - Nature …, 2021 - nature.com
Single-cell RNA sequencing has revealed extensive transcriptional cell state diversity in
cancer, often observed independently of genetic heterogeneity, raising the central question …

Decoding the interplay between genetic and non-genetic drivers of metastasis

P Karras, JRM Black, N McGranahan, JC Marine - Nature, 2024 - nature.com
Metastasis is a multistep process by which cancer cells break away from their original
location and spread to distant organs, and is responsible for the vast majority of cancer …

The evolutionary theory of cancer: challenges and potential solutions

L Laplane, CC Maley - Nature Reviews Cancer, 2024 - nature.com
The clonal evolution model of cancer was developed in the 1950s–1970s and became
central to cancer biology in the twenty-first century, largely through studies of cancer …

Cellular barcoding to decipher clonal dynamics in disease

VG Sankaran, JS Weissman, LI Zon - Science, 2022 - science.org
Cellular barcodes are distinct DNA sequences that enable one to track specific cells across
time or space. Recent advances in our ability to detect natural or synthetic cellular barcodes …

Defining heritability, plasticity, and transition dynamics of cellular phenotypes in somatic evolution

JS Schiffman, AR D'Avino, T Prieto, Y Pang, Y Fan… - Nature Genetics, 2024 - nature.com
Single-cell sequencing has characterized cell state heterogeneity across diverse healthy
and malignant tissues. However, the plasticity or heritability of these cell states remains …