Stochastic models of population extinction

O Ovaskainen, B Meerson - Trends in ecology & evolution, 2010 - cell.com
Theoretical ecologists have long sought to understand how the persistence of populations
depends on biotic and abiotic factors. Classical work showed that demographic stochasticity …

WKB theory of large deviations in stochastic populations

M Assaf, B Meerson - Journal of Physics A: Mathematical and …, 2017 - iopscience.iop.org
Stochasticity can play an important role in the dynamics of biologically relevant populations.
These span a broad range of scales: from intra-cellular populations of molecules to …

Extinction of metastable stochastic populations

M Assaf, B Meerson - Physical Review E—Statistical, Nonlinear, and Soft …, 2010 - APS
We investigate the phenomenon of extinction of a long-lived self-regulating stochastic
population, caused by intrinsic (demographic) noise. Extinction typically occurs via one of …

Master equations and the theory of stochastic path integrals

MF Weber, E Frey - Reports on Progress in Physics, 2017 - iopscience.iop.org
This review provides a pedagogic and self-contained introduction to master equations and
to their representation by path integrals. Since the 1930s, master equations have served as …

Generalized model of island biodiversity

DA Kessler, NM Shnerb - Physical Review E, 2015 - APS
The dynamics of a local community of competing species with weak immigration from a static
regional pool is studied. Implementing the generalized competitive Lotka-Volterra model …

A primer on noise-induced transitions in applied dynamical systems

E Forgoston, RO Moore - SIAM Review, 2018 - SIAM
Noise plays a fundamental role in a wide variety of physical and biological dynamical
systems. It can arise from an external forcing or due to random dynamics internal to the …

Supercluster states and phase transitions in aggregation-fragmentation processes

W Otieno, NV Brilliantov, PL Krapivsky - Physical Review E, 2023 - APS
We study the evolution of aggregates triggered by collisions with monomers that either lead
to the attachment of monomers or the break-up of aggregates into constituting monomers …

Mean growth rate when rare is not a reliable metric for persistence of species

J Pande, T Fung, R Chisholm, NM Shnerb - Ecology letters, 2020 - Wiley Online Library
The coexistence of many species within ecological communities poses a long‐standing
theoretical puzzle. Modern coexistence theory (MCT) and related techniques explore this …

First passage problems in biology

T Chou, MR D'Orsogna - First-passage phenomena and their …, 2014 - World Scientific
Applications of first passage times in stochastic processes arise across a wide range of
length and time scales in biological settings. After an initial technical overview, we survey …

Dynamical signatures of discontinuous phase transitions: How phase coexistence determines exponential versus power-law scaling

K Ptaszyński, M Esposito - Physical Review E, 2024 - APS
There are conflicting reports in the literature regarding the finite-size scaling of the
Liouvillian gap and dynamical fluctuations at discontinuous phase transitions, with various …