[HTML][HTML] The next wave of interactomics: Map** the SLiM-based interactions of the intrinsically disordered proteome
Short linear motifs (SLiMs) are a unique and ubiquitous class of protein interaction modules
that perform key regulatory functions and drive dynamic complex formation. For decades …
that perform key regulatory functions and drive dynamic complex formation. For decades …
[HTML][HTML] Specificity in PDZ-peptide interaction networks: Computational analysis and review
Globular PDZ domains typically serve as protein–protein interaction modules that regulate a
wide variety of cellular functions via recognition of short linear motifs (SLiMs). Often, PDZ …
wide variety of cellular functions via recognition of short linear motifs (SLiMs). Often, PDZ …
Host PDZ‐containing proteins targeted by SARS‐CoV‐2
C Caillet‐Saguy, F Durbesson, VV Rezelj… - The FEBS …, 2021 - Wiley Online Library
Small linear motifs targeting protein interacting domains called PSD‐95/Dlg/ZO‐1 (PDZ)
have been identified at the C terminus of the severe acute respiratory syndrome coronavirus …
have been identified at the C terminus of the severe acute respiratory syndrome coronavirus …
Quantitative fragmentomics allow affinity map** of interactomes
Human protein networks have been widely explored but most binding affinities remain
unknown, hindering quantitative interactome-function studies. Yet interactomes rely on …
unknown, hindering quantitative interactome-function studies. Yet interactomes rely on …
Orchestrating serine/threonine phosphorylation and elucidating downstream effects by short linear motifs
J Kliche, Y Ivarsson - Biochemical Journal, 2022 - portlandpress.com
Cellular function is based on protein–protein interactions. A large proportion of these
interactions involves the binding of short linear motifs (SLiMs) by folded globular domains …
interactions involves the binding of short linear motifs (SLiMs) by folded globular domains …
[HTML][HTML] Dual specificity PDZ-and 14-3-3-binding motifs: a structural and interactomics study
Protein-protein interaction motifs are often alterable by post-translational modifications. For
example, 19% of predicted human PDZ domain-binding motifs (PBMs) have been …
example, 19% of predicted human PDZ domain-binding motifs (PBMs) have been …
High‐throughput competitive fluorescence polarization assay reveals functional redundancy in the S100 protein family
The calcium‐binding, vertebrate‐specific S100 protein family consists of 20 paralogs in
humans (referred as the S100ome), with several clinically important members. To explore …
humans (referred as the S100ome), with several clinically important members. To explore …
Promiscuity map** of the S100 protein family using a high-throughput holdup assay
MA Simon, É Bartus, B Mag, E Boros, L Roszjár… - Scientific Reports, 2022 - nature.com
S100 proteins are small, typically homodimeric, vertebrate-specific EF-hand proteins that
establish Ca2+-dependent protein–protein interactions in the intra-and extracellular …
establish Ca2+-dependent protein–protein interactions in the intra-and extracellular …
Uncovering the BIN1-SH3 interactome underpinning centronuclear myopathy
Truncation of the protein-protein interaction SH3 domain of the membrane remodeling
Bridging Integrator 1 (BIN1, Amphiphysin 2) protein leads to centronuclear myopathy. Here …
Bridging Integrator 1 (BIN1, Amphiphysin 2) protein leads to centronuclear myopathy. Here …
Molecules interact. But how strong and how much?
Interactomics aims to characterize all interactions formed between molecules that comprise
our body. Although it emerged from quantitative biophysics, it has devolved into a …
our body. Although it emerged from quantitative biophysics, it has devolved into a …