[HTML][HTML] The next wave of interactomics: Map** the SLiM-based interactions of the intrinsically disordered proteome

NE Davey, L Simonetti, Y Ivarsson - Current opinion in structural biology, 2023 - Elsevier
Short linear motifs (SLiMs) are a unique and ubiquitous class of protein interaction modules
that perform key regulatory functions and drive dynamic complex formation. For decades …

[HTML][HTML] Specificity in PDZ-peptide interaction networks: Computational analysis and review

JF Amacher, L Brooks 3rd, TH Hampton… - Journal of Structural …, 2020 - Elsevier
Globular PDZ domains typically serve as protein–protein interaction modules that regulate a
wide variety of cellular functions via recognition of short linear motifs (SLiMs). Often, PDZ …

Host PDZ‐containing proteins targeted by SARS‐CoV‐2

C Caillet‐Saguy, F Durbesson, VV Rezelj… - The FEBS …, 2021 - Wiley Online Library
Small linear motifs targeting protein interacting domains called PSD‐95/Dlg/ZO‐1 (PDZ)
have been identified at the C terminus of the severe acute respiratory syndrome coronavirus …

Quantitative fragmentomics allow affinity map** of interactomes

G Gogl, B Zambo, C Kostmann, A Cousido-Siah… - nature …, 2022 - nature.com
Human protein networks have been widely explored but most binding affinities remain
unknown, hindering quantitative interactome-function studies. Yet interactomes rely on …

Orchestrating serine/threonine phosphorylation and elucidating downstream effects by short linear motifs

J Kliche, Y Ivarsson - Biochemical Journal, 2022 - portlandpress.com
Cellular function is based on protein–protein interactions. A large proportion of these
interactions involves the binding of short linear motifs (SLiMs) by folded globular domains …

[HTML][HTML] Dual specificity PDZ-and 14-3-3-binding motifs: a structural and interactomics study

G Gogl, P Jane, C Caillet-Saguy, C Kostmann, G Bich… - Structure, 2020 - cell.com
Protein-protein interaction motifs are often alterable by post-translational modifications. For
example, 19% of predicted human PDZ domain-binding motifs (PBMs) have been …

High‐throughput competitive fluorescence polarization assay reveals functional redundancy in the S100 protein family

MA Simon, P Ecsédi, GM Kovács, ÁL Póti… - The FEBS …, 2020 - Wiley Online Library
The calcium‐binding, vertebrate‐specific S100 protein family consists of 20 paralogs in
humans (referred as the S100ome), with several clinically important members. To explore …

Promiscuity map** of the S100 protein family using a high-throughput holdup assay

MA Simon, É Bartus, B Mag, E Boros, L Roszjár… - Scientific Reports, 2022 - nature.com
S100 proteins are small, typically homodimeric, vertebrate-specific EF-hand proteins that
establish Ca2+-dependent protein–protein interactions in the intra-and extracellular …

Uncovering the BIN1-SH3 interactome underpinning centronuclear myopathy

B Zambo, E Edelweiss, B Morlet, L Negroni, M Pajkos… - Elife, 2024 - elifesciences.org
Truncation of the protein-protein interaction SH3 domain of the membrane remodeling
Bridging Integrator 1 (BIN1, Amphiphysin 2) protein leads to centronuclear myopathy. Here …

Molecules interact. But how strong and how much?

K Weimer, B Zambo, G Gogl - BioEssays, 2023 - Wiley Online Library
Interactomics aims to characterize all interactions formed between molecules that comprise
our body. Although it emerged from quantitative biophysics, it has devolved into a …