Why nature really chose phosphate

SCL Kamerlin, PK Sharma, RB Prasad… - Quarterly reviews of …, 2013 - cambridge.org
Phosphoryl transfer plays key roles in signaling, energy transduction, protein synthesis, and
maintaining the integrity of the genetic material. On the surface, it would appear to be a …

Terminal deoxynucleotidyl transferase: the story of a misguided DNA polymerase

EA Motea, AJ Berdis - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2010 - Elsevier
Nearly every DNA polymerase characterized to date exclusively catalyzes the incorporation
of mononucleotides into a growing primer using a DNA or RNA template as a guide to direct …

Structure and mechanism of DNA polymerase β

WA Beard, SH Wilson - Biochemistry, 2014 - ACS Publications
DNA polymerase (pol) β is a small eukaryotic DNA polymerase composed of two domains.
Each domain contributes an enzymatic activity (DNA synthesis and deoxyribose phosphate …

The empirical valence bond model: theory and applications

SCL Kamerlin, A Warshel - Wiley Interdisciplinary Reviews …, 2011 - Wiley Online Library
Recent years have seen an explosion in computer power, allowing for the examination of
ever more challenging problems. For instance, a recent simulation study, which was the first …

Nucleoside triphosphates—building blocks for the modification of nucleic acids

M Hollenstein - Molecules, 2012 - mdpi.com
Nucleoside triphosphates are moldable entities that can easily be functionalized at various
locations. The enzymatic polymerization of these modified triphosphate analogues …

DNA polymerase family X: function, structure, and cellular roles

J Yamtich, JB Sweasy - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2010 - Elsevier
The X family of DNA polymerases in eukaryotic cells consists of terminal transferase, and
DNA polymerases β, λ, and μ. These enzymes have similar structural portraits, yet different …

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction

J Kottur, DT Nair - Nucleic Acids Research, 2018 - academic.oup.com
DNA synthesis by DNA polymerases (dPols) is central to duplication and maintenance of the
genome in all living organisms. dPols catalyze the formation of a phosphodiester bond …

How DNA polymerases catalyse replication and repair with contrasting fidelity

WJ Wu, W Yang, MD Tsai - Nature Reviews Chemistry, 2017 - nature.com
DNA polymerases were named for their function of catalysing DNA replication, a process
that is necessary for growth and propagation of life. DNA involving Watson–Crick base …

Mechanisms of DNA polymerases

AJ Berdis - Chemical reviews, 2009 - ACS Publications
The great Chinese strategist Sun Tsu wrote,“So it is said that if you know your enemies and
know yourself, you will fight without danger in battles.” 1 This quote was originally meant to …

The EVB as a quantitative tool for formulating simulations and analyzing biological and chemical reactions

SCL Kamerlin, A Warshel - Faraday discussions, 2010 - pubs.rsc.org
Recent years have seen dramatic improvements in computer power, allowing ever more
challenging problems to be approached. In light of this, it is imperative to have a quantitative …