Epigenetics, DNA damage, and aging

C Soto-Palma, LJ Niedernhofer… - The Journal of …, 2022 - Am Soc Clin Investig
Over the course of a human lifespan, genome integrity erodes, leading to an increased
abundance of several types of chromatin changes. The abundance of DNA lesions …

Chromatin and nucleosome dynamics in DNA damage and repair

MH Hauer, SM Gasser - Genes & development, 2017 - genesdev.cshlp.org
Chromatin is organized into higher-order structures that form subcompartments in
interphase nuclei. Different categories of specialized enzymes act on chromatin and …

Comprehensive map** of histone modifications at DNA double-strand breaks deciphers repair pathway chromatin signatures

T Clouaire, V Rocher, A Lashgari, C Arnould… - Molecular cell, 2018 - cell.com
Double-strand breaks (DSBs) are extremely detrimental DNA lesions that can lead to cancer-
driving mutations and translocations. Non-homologous end joining (NHEJ) and homologous …

Liquid demixing of intrinsically disordered proteins is seeded by poly (ADP-ribose)

M Altmeyer, KJ Neelsen, F Teloni… - Nature …, 2015 - nature.com
Intrinsically disordered proteins can phase separate from the soluble intracellular space,
and tend to aggregate under pathological conditions. The physiological functions and …

How cells ensure correct repair of DNA double-strand breaks

J Her, SF Bunting - Journal of Biological Chemistry, 2018 - ASBMB
DNA double-strand breaks (DSBs) arise regularly in cells and when left unrepaired cause
senescence or cell death. Homologous recombination (HR) and nonhomologous end …

Variants of core histones and their roles in cell fate decisions, development and cancer

M Buschbeck, SB Hake - Nature reviews Molecular cell biology, 2017 - nature.com
Histone variants endow chromatin with unique properties and show a specific genomic
distribution that is regulated by specific deposition and removal machineries. These variants …

SIRT7 is a histone desuccinylase that functionally links to chromatin compaction and genome stability

L Li, L Shi, S Yang, R Yan, D Zhang, J Yang… - Nature …, 2016 - nature.com
Although SIRT7 is a member of sirtuin family proteins that are described as NAD+-
dependent class III histone deacetylases, the intrinsic enzymatic activity of this sirtuin protein …

BRCA2 controls DNA: RNA hybrid level at DSBs by mediating RNase H2 recruitment

G D'Alessandro, DR Whelan, SM Howard… - Nature …, 2018 - nature.com
DNA double-strand breaks (DSBs) are toxic DNA lesions, which, if not properly repaired,
may lead to genomic instability, cell death and senescence. Damage-induced long non …

The replication checkpoint prevents two types of fork collapse without regulating replisome stability

H Dungrawala, KL Rose, KP Bhat, KN Mohni, GG Glick… - Molecular cell, 2015 - cell.com
The ATR replication checkpoint ensures that stalled forks remain stable when replisome
movement is impeded. Using an improved iPOND protocol combined with SILAC mass …

PARP1 links CHD2-mediated chromatin expansion and H3. 3 deposition to DNA repair by non-homologous end-joining

MS Luijsterburg, I de Krijger, WW Wiegant, RG Shah… - Molecular cell, 2016 - cell.com
The response to DNA double-strand breaks (DSBs) requires alterations in chromatin
structure to promote the assembly of repair complexes on broken chromosomes. Non …