Ten years of the maize nested association map** population: impact, limitations, and future directions

JL Gage, B Monier, A Giri, ES Buckler - The Plant Cell, 2020 - academic.oup.com
It has been just over a decade since the release of the maize (Zea mays) Nested Association
Map** (NAM) population. The NAM population has been and continues to be an …

Introducing the FAIR Principles for research software

M Barker, NP Chue Hong, DS Katz, AL Lamprecht… - Scientific Data, 2022 - nature.com
Research software is a fundamental and vital part of research, yet significant challenges to
discoverability, productivity, quality, reproducibility, and sustainability exist. Improving the …

Toward more rigorous and informative nutritional epidemiology: the rational space between dismissal and defense of the status quo

AW Brown, S Aslibekyan, D Bier… - Critical Reviews in …, 2023 - Taylor & Francis
To date, nutritional epidemiology has relied heavily on relatively weak methods including
simple observational designs and substandard measurements. Despite low internal validity …

[KNIHA][B] Big data, little data, no data: Scholarship in the networked world

CL Borgman - 2017 - books.google.com
An examination of the uses of data within a changing knowledge infrastructure, offering
analysis and case studies from the sciences, social sciences, and humanities.“Big Data” is …

Open research knowledge graph: next generation infrastructure for semantic scholarly knowledge

MY Jaradeh, A Oelen, KE Farfar, M Prinz… - Proceedings of the 10th …, 2019 - dl.acm.org
Despite improved digital access to scholarly knowledge in recent decades, scholarly
communication remains exclusively document-based. In this form, scholarly knowledge is …

The FAIR Guiding Principles for scientific data management and stewardship

MD Wilkinson, M Dumontier, IJJ Aalbersberg… - Scientific data, 2016 - nature.com
There is an urgent need to improve the infrastructure supporting the reuse of scholarly data.
A diverse set of stakeholders—representing academia, industry, funding agencies, and …

Using the Jupyter notebook as a tool for open science: An empirical study

BM Randles, IV Pasquetto, MS Golshan… - 2017 ACM/IEEE …, 2017 - ieeexplore.ieee.org
As scientific work becomes more computational and data-intensive, research processes and
results become more difficult to interpret and reproduce. In this poster, we show how the …

Computing environments for reproducibility: Capturing the “Whole Tale”

A Brinckman, K Chard, N Gaffney, M Hategan… - Future Generation …, 2019 - Elsevier
The act of sharing scientific knowledge is rapidly evolving away from traditional articles and
presentations to the delivery of executable objects that integrate the data and computational …

ClinicalCodes: an online clinical codes repository to improve the validity and reproducibility of research using electronic medical records

DA Springate, E Kontopantelis, DM Ashcroft, I Olier… - PloS one, 2014 - journals.plos.org
Lists of clinical codes are the foundation for research undertaken using electronic medical
records (EMRs). If clinical code lists are not available, reviewers are unable to determine the …

Scholarly context not found: one in five articles suffers from reference rot

M Klein, H Van de Sompel, R Sanderson, H Shankar… - PloS one, 2014 - journals.plos.org
The emergence of the web has fundamentally affected most aspects of information
communication, including scholarly communication. The immediacy that characterizes …