Stabilization and structure calculations for noncovalent interactions in extended molecular systems based on wave function and density functional theories
KE Riley, M Pitonák, P Jurecka, P Hobza - Chemical Reviews, 2010 - ACS Publications
More than 20 years ago, we published in Chemical ReViews a paper entitled
“Intermolecular Interactions between Medium-Sized Systems. Nonempirical and Empirical …
“Intermolecular Interactions between Medium-Sized Systems. Nonempirical and Empirical …
The devil in the details: A tutorial review on some undervalued aspects of density functional theory calculations
Density functional theory (DFT) has become ubiquitous for chemical applications in research
and in education. The exact functional at the foundation of DFT is unfortunately unknown …
and in education. The exact functional at the foundation of DFT is unfortunately unknown …
Refinement of the Cornell et al. nucleic acids force field based on reference quantum chemical calculations of glycosidic torsion profiles
M Zgarbová, M Otyepka, J Sponer… - Journal of chemical …, 2011 - ACS Publications
We report a reparameterization of the glycosidic torsion χ of the Cornell et al. AMBER force
field for RNA, χOL. The parameters remove destabilization of the anti region found in the ff99 …
field for RNA, χOL. The parameters remove destabilization of the anti region found in the ff99 …
A geometrical correction for the inter-and intra-molecular basis set superposition error in Hartree-Fock and density functional theory calculations for large systems
A semi-empirical counterpoise-type correction for basis set superposition error (BSSE) in
molecular systems is presented. An atom pair-wise potential corrects for the inter-and intra …
molecular systems is presented. An atom pair-wise potential corrects for the inter-and intra …
Why the standard B3LYP/6-31G* model chemistry should not be used in DFT calculations of molecular thermochemistry: understanding and correcting the problem
We analyze the error compensations that are responsible for the relatively good
performance of the popular B3LYP/6-31G* model chemistry for molecular thermochemistry …
performance of the popular B3LYP/6-31G* model chemistry for molecular thermochemistry …
[HTML][HTML] Fantasy versus reality in fragment-based quantum chemistry
JM Herbert - The Journal of chemical physics, 2019 - pubs.aip.org
Since the introduction of the fragment molecular orbital method 20 years ago, fragment-
based approaches have occupied a small but growing niche in quantum chemistry. These …
based approaches have occupied a small but growing niche in quantum chemistry. These …
Noncovalent interactions in biochemistry
KE Riley, P Hobza - Wiley Interdisciplinary Reviews …, 2011 - Wiley Online Library
Noncovalent interactions are known to play a key role in biochemistry. The knowledge of
stabilization (relative) energies and their components is very important for understanding the …
stabilization (relative) energies and their components is very important for understanding the …
Neutral peptides in the gas phase: conformation and aggregation issues
E Gloaguen, M Mons, K Schwing… - Chemical Reviews, 2020 - ACS Publications
Combined IR and UV laser spectroscopic techniques in molecular beams merged with
theoretical approaches have proven to be an ideal tool to elucidate intrinsic structural …
theoretical approaches have proven to be an ideal tool to elucidate intrinsic structural …
Quantifying Intramolecular Basis Set Superposition Errors
We show that medium-sized Gaussian basis sets lead to significant intramolecular basis set
superposition errors at Hartree–Fock and density functional levels of theory, with artificial …
superposition errors at Hartree–Fock and density functional levels of theory, with artificial …
A benchmark study of aromaticity indexes for benzene, pyridine and the diazines–I. Ground state aromaticity
Five different aromaticity indexes are benchmarked for benzene, pyridine and the diazines
in their ground states. A basis set study was performed using the Pople style, Karlsruhe and …
in their ground states. A basis set study was performed using the Pople style, Karlsruhe and …