Stabilization and structure calculations for noncovalent interactions in extended molecular systems based on wave function and density functional theories

KE Riley, M Pitonák, P Jurecka, P Hobza - Chemical Reviews, 2010 - ACS Publications
More than 20 years ago, we published in Chemical ReViews a paper entitled
“Intermolecular Interactions between Medium-Sized Systems. Nonempirical and Empirical …

The devil in the details: A tutorial review on some undervalued aspects of density functional theory calculations

P Morgante, R Peverati - International Journal of Quantum …, 2020 - Wiley Online Library
Density functional theory (DFT) has become ubiquitous for chemical applications in research
and in education. The exact functional at the foundation of DFT is unfortunately unknown …

Refinement of the Cornell et al. nucleic acids force field based on reference quantum chemical calculations of glycosidic torsion profiles

M Zgarbová, M Otyepka, J Sponer… - Journal of chemical …, 2011 - ACS Publications
We report a reparameterization of the glycosidic torsion χ of the Cornell et al. AMBER force
field for RNA, χOL. The parameters remove destabilization of the anti region found in the ff99 …

A geometrical correction for the inter-and intra-molecular basis set superposition error in Hartree-Fock and density functional theory calculations for large systems

H Kruse, S Grimme - The Journal of chemical physics, 2012 - pubs.aip.org
A semi-empirical counterpoise-type correction for basis set superposition error (BSSE) in
molecular systems is presented. An atom pair-wise potential corrects for the inter-and intra …

Why the standard B3LYP/6-31G* model chemistry should not be used in DFT calculations of molecular thermochemistry: understanding and correcting the problem

H Kruse, L Goerigk, S Grimme - The Journal of organic chemistry, 2012 - ACS Publications
We analyze the error compensations that are responsible for the relatively good
performance of the popular B3LYP/6-31G* model chemistry for molecular thermochemistry …

[HTML][HTML] Fantasy versus reality in fragment-based quantum chemistry

JM Herbert - The Journal of chemical physics, 2019 - pubs.aip.org
Since the introduction of the fragment molecular orbital method 20 years ago, fragment-
based approaches have occupied a small but growing niche in quantum chemistry. These …

Noncovalent interactions in biochemistry

KE Riley, P Hobza - Wiley Interdisciplinary Reviews …, 2011 - Wiley Online Library
Noncovalent interactions are known to play a key role in biochemistry. The knowledge of
stabilization (relative) energies and their components is very important for understanding the …

Neutral peptides in the gas phase: conformation and aggregation issues

E Gloaguen, M Mons, K Schwing… - Chemical Reviews, 2020 - ACS Publications
Combined IR and UV laser spectroscopic techniques in molecular beams merged with
theoretical approaches have proven to be an ideal tool to elucidate intrinsic structural …

Quantifying Intramolecular Basis Set Superposition Errors

Q Pitteloud, P Wind, SR Jensen… - Journal of Chemical …, 2023 - ACS Publications
We show that medium-sized Gaussian basis sets lead to significant intramolecular basis set
superposition errors at Hartree–Fock and density functional levels of theory, with artificial …

A benchmark study of aromaticity indexes for benzene, pyridine and the diazines–I. Ground state aromaticity

J Pedersen, KV Mikkelsen - RSC advances, 2022 - pubs.rsc.org
Five different aromaticity indexes are benchmarked for benzene, pyridine and the diazines
in their ground states. A basis set study was performed using the Pople style, Karlsruhe and …