The emerging phylogenetic perspective on the evolution of actinopterygian fishes
A Dornburg, TJ Near - Annual Review of Ecology, Evolution …, 2021 - annualreviews.org
The emergence of a new phylogeny of ray-finned fishes at the turn of the twenty-first century
marked a paradigm shift in understanding the evolutionary history of half of living …
marked a paradigm shift in understanding the evolutionary history of half of living …
Using PhyloSuite for molecular phylogeny and tree‐based analyses
Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced
researchers, conquering the large number of software programs required for a multilocus …
researchers, conquering the large number of software programs required for a multilocus …
Phylogenetic classification of bony fishes
Background Fish classifications, as those of most other taxonomic groups, are being
transformed drastically as new molecular phylogenies provide support for natural groups …
transformed drastically as new molecular phylogenies provide support for natural groups …
A new model army: Emerging fish models to study the genomics of vertebrate Evo‐Devo
Many fields of biology—including vertebrate Evo‐Devo research—are facing an explosion of
genomic and transcriptomic sequence information and a multitude of fish species are now …
genomic and transcriptomic sequence information and a multitude of fish species are now …
PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses
In phylogenetic analyses of molecular sequence data, partitioning involves estimating
independent models of molecular evolution for different sets of sites in a sequence …
independent models of molecular evolution for different sets of sites in a sequence …
Selecting optimal partitioning schemes for phylogenomic datasets
Background Partitioning involves estimating independent models of molecular evolution for
different subsets of sites in a sequence alignment, and has been shown to improve …
different subsets of sites in a sequence alignment, and has been shown to improve …
Resolution of ray-finned fish phylogeny and timing of diversification
Ray-finned fishes make up half of all living vertebrate species. Nearly all ray-finned fishes
are teleosts, which include most commercially important fish species, several model …
are teleosts, which include most commercially important fish species, several model …
[HTML][HTML] The tree of life and a new classification of bony fishes
The tree of life of fishes is in a state of flux because we still lack a comprehensive phylogeny
that includes all major groups. The situation is most critical for a large clade of spiny-finned …
that includes all major groups. The situation is most critical for a large clade of spiny-finned …
[HTML][HTML] Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria
Brachycephaloidea is a monophyletic group of frogs with more than 1000 species
distributed throughout the New World tropics, subtropics, and Andean regions. Recently, the …
distributed throughout the New World tropics, subtropics, and Andean regions. Recently, the …
Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup …
Abstract Background With nearly 1,100 species, the fish family Characidae represents more
than half of the species of Characiformes, and is a key component of Neotropical freshwater …
than half of the species of Characiformes, and is a key component of Neotropical freshwater …