XRN 5′→ 3′ exoribonucleases: structure, mechanisms and functions

VK Nagarajan, CI Jones, SF Newbury… - Biochimica et Biophysica …, 2013 - Elsevier
The XRN family of 5′→ 3′ exoribonucleases is critical for ensuring the fidelity of cellular
RNA turnover in eukaryotes. Highly conserved across species, the family is typically …

The functional meaning of 5′ UTR in protein-coding genes

N Ryczek, A Łyś, I Makałowska - International Journal of Molecular …, 2023 - mdpi.com
As it is well known, messenger RNA has many regulatory regions along its sequence length.
One of them is the 5′ untranslated region (5'UTR), which itself contains many regulatory …

Xrn1 is a deNADding enzyme modulating mitochondrial NAD-capped RNA

S Sharma, J Yang, E Grudzien-Nogalska… - Nature …, 2022 - nature.com
The existence of non-canonical nicotinamide adenine diphosphate (NAD) 5′-end capped
RNAs is now well established. Nevertheless, the biological function of this nucleotide …

The cell biology of quiescent yeast–a diversity of individual scenarios

I Sagot, D Laporte - Journal of Cell Science, 2019 - journals.biologists.com
Most cells, from unicellular to complex organisms, spend part of their life in quiescence, a
temporary non-proliferating state. Although central for a variety of essential processes …

Small molecules in development for the treatment of spinal muscular atrophy: miniperspective

AN Calder, EJ Androphy… - Journal of medicinal …, 2016 - ACS Publications
Spinal muscular atrophy (SMA) is an autosomal recessive neurodegenerative disease
resulting from pathologically low levels of survival motor neuron (SMN) protein. The majority …

Coupling mRNA synthesis and decay

KA Braun, ET Young - Molecular and cellular biology, 2014 - Taylor & Francis
What has been will be again, what has been done will be done again; there is nothing new
under the sun.—Ecclesiastes 1: 9 (New International Version) Posttranscriptional regulation …

Elimination of cap structures generated by mRNA decay involves the new scavenger mRNA decap** enzyme Aph1/FHIT together with DcpS

V Taverniti, B Séraphin - Nucleic acids research, 2015 - academic.oup.com
Eukaryotic 5′ mRNA cap structures participate to the post-transcriptional control of gene
expression before being released by the two main mRNA decay pathways. In the 3′-5 …

[HTML][HTML] The decap** scavenger enzyme DCS-1 controls microRNA levels in Caenorhabditis elegans

GD Bossé, S Rüegger, MC Ow, A Vasquez-Rifo… - Molecular cell, 2013 - cell.com
In metazoans, microRNAs play a critical role in the posttranscriptional regulation of genes
required for cell proliferation and differentiation. MicroRNAs themselves are regulated by a …

Phosphoproteomic analysis identifies proteins involved in transcription-coupled mRNA decay as targets of Snf1 signaling

KA Braun, S Vaga, KM Dombek, F Fang… - Science …, 2014 - science.org
Stresses, such as glucose depletion, activate Snf1, the Saccharomyces cerevisiae ortholog
of adenosine monophosphate–activated protein kinase (AMPK), enabling adaptive cellular …

Quality control of assembly-defective U1 snRNAs by decap** and 5′-to-3′ exonucleolytic digestion

S Shukla, R Parker - … of the National Academy of Sciences, 2014 - National Acad Sciences
The accurate biogenesis of RNA–protein complexes is a key aspect of eukaryotic cells.
Defects in Sm protein complex binding to snRNAs are known to reduce levels of snRNAs …