Identification of bioactive metabolites using activity metabolomics

MM Rinschen, J Ivanisevic, M Giera… - Nature reviews Molecular …, 2019 - nature.com
The metabolome, the collection of small-molecule chemical entities involved in metabolism,
has traditionally been studied with the aim of identifying biomarkers in the diagnosis and …

Epigenetic-sensitive pathways in personalized therapy of major cardiovascular diseases

C Schiano, G Benincasa, M Franzese… - Pharmacology & …, 2020 - Elsevier
The complex pathobiology underlying cardiovascular diseases (CVDs) has yet to be
explained. Aberrant epigenetic changes may result from alterations in enzymatic activities …

[HTML][HTML] Tuft-cell-derived leukotrienes drive rapid anti-helminth immunity in the small intestine but are dispensable for anti-protist immunity

JW McGinty, HA Ting, TE Billipp, MS Nadjsombati… - Immunity, 2020 - cell.com
Helminths, allergens, and certain protists induce type 2 immune responses, but the
underlying mechanisms of immune activation remain poorly understood. In the small …

Breast cancer quantitative proteome and proteogenomic landscape

HJ Johansson, F Socciarelli, NM Vacanti… - Nature …, 2019 - nature.com
In the preceding decades, molecular characterization has revolutionized breast cancer (BC)
research and therapeutic approaches. Presented herein, an unbiased analysis of breast …

Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0

PC Carvalho, DB Lima, FV Leprevost, MDM Santos… - Nature protocols, 2016 - nature.com
PatternLab for proteomics is an integrated computational environment that unifies several
previously published modules for the analysis of shotgun proteomic data. The contained …

Deep thermal profiling for detection of functional proteoform groups

N Kurzawa, IR Leo, M Stahl, E Kunold, I Becher… - Nature Chemical …, 2023 - nature.com
The complexity of the functional proteome extends considerably beyond the coding genome,
resulting in millions of proteoforms. Investigation of proteoforms and their functional roles is …

[HTML][HTML] Gut microbiota changes and its potential relations with thyroid carcinoma

X Yu, W Jiang, RO Kosik, Y Song, Q Luo, T Qiao… - Journal of advanced …, 2022 - Elsevier
Introduction Emerging evidence suggests that the essence of life is the ecological balance of
the neural, endocrine, metabolic, microbial, and immune systems. Gut microbiota have been …

Anatomy and evolution of database search engines—a central component of mass spectrometry based proteomic workflows

K Verheggen, H Ræder, FS Berven… - Mass spectrometry …, 2020 - Wiley Online Library
Sequence database search engines are bioinformatics algorithms that identify peptides from
tandem mass spectra using a reference protein sequence database. Two decades of …

Create, run, share, publish, and reference your LC–MS, FIA–MS, GC–MS, and NMR data analysis workflows with the Workflow4Metabolomics 3.0 Galaxy online …

Y Guitton, M Tremblay-Franco, G Le Corguillé… - … International Journal of …, 2017 - Elsevier
Metabolomics is a key approach in modern functional genomics and systems biology. Due
to the complexity of metabolomics data, the variety of experimental designs, and the …

The exon-junction complex helicase eIF4A3 controls cell fate via coordinated regulation of ribosome biogenesis and translational output

DC Kanellis, JA Espinoza, A Zisi, E Sakkas… - Science …, 2021 - science.org
Eukaryotic initiation factor 4A-III (eIF4A3), a core helicase component of the exon junction
complex, is essential for splicing, mRNA trafficking, and nonsense-mediated decay …