Democratization of genomics technologies has enabled the rapid determination of
genotypes. More recently the democratization of comprehensive proteomics technologies is …

In nature microorganisms live in complex microbial communities. Comprehensive taxonomic
and functional knowledge about microbial communities supports medical and technical …

The ProteomeXchange (PX) consortium of proteomics resources (http://www.
proteomexchange. org) has standardized data submission and dissemination of mass …

Abstract Global Natural Product Social Molecular Networking (GNPS) is an interactive online
small molecule–focused tandem mass spectrometry (MS2) data curation and analysis …

Abstract The PRoteomics IDEntifications (PRIDE) database is one of the world-leading data
repositories of mass spectrometry (MS)-based proteomics data. Since the beginning of …

Abstract The ProteomeXchange (PX) Consortium of proteomics resources (http://www.
proteomexchange. org) was formally started in 2011 to standardize data submission and …

Major advancements have recently been made in mass spectrometry-based proteomics,
yielding an increasing number of datasets from various proteomics projects worldwide. In …

Individual resources can join ProteomeXchange by implementing the ProteomeXchange
data submission and dissemination guidelines, and metadata requirements. In the current …

Mass spectrometry (MS) instruments and experimental protocols are rapidly advancing, but
the software tools to analyse tandem mass spectra are lagging behind. We present a …

The Trans-Proteomic Pipeline (TPP) mass spectrometry data analysis suite has been in
continual development and refinement since its first tools, PeptideProphet and …