[HTML][HTML] Underdetected dispersal and extensive local transmission drove the 2022 mpox epidemic

MI Paredes, N Ahmed, M Figgins, V Colizza, P Lemey… - Cell, 2024 - cell.com
Summary The World Health Organization declared mpox a public health emergency of
international concern in July 2022. To investigate global mpox transmission and population …

COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza viruses

Z Chen, JLH Tsui, B Gutierrez, S Busch Moreno… - Science, 2024 - science.org
The global dynamics of seasonal influenza viruses inform the design of surveillance,
intervention, and vaccination strategies. The COVID-19 pandemic provided a singular …

Human outbreaks of a novel reassortant Oropouche virus in the Brazilian Amazon region

FG Naveca, TAP Almeida, V Souza, V Nascimento… - Nature Medicine, 2024 - nature.com
Abstract The Brazilian western Amazon is experiencing its largest laboratory-confirmed
Oropouche virus (OROV) outbreak, with more than 6,300 reported cases between 2022 and …

Untangling lineage introductions, persistence and transmission drivers of HP-PRRSV sublineage 8.7

Y Sun, J **ng, SL Hong, N Bollen, S Xu, Y Li… - Nature …, 2024 - nature.com
Despite a rapid expansion of Porcine reproductive and respiratory syndrome virus (PRRSV)
sublineage 8.7 over recent years, very little is known about the patterns of virus evolution …

Emergence of a novel reassortant Oropouche virus drives persistent human outbreaks in the Brazilian Amazon region from 2022 to 2024

FG Naveca, TAP de Almeida, V Souza, V Nascimento… - medRxiv, 2024 - medrxiv.org
ABSTRACT The Brazilian western Amazon region is currently experiencing its largest
laboratory confirmed Oropouche virus (OROV) outbreak, with nearly 6,000 reported cases in …

Deep learning and likelihood approaches for viral phylogeography converge on the same answers whether the inference model is right or wrong

A Thompson, BJ Liebeskind, EJ Scully… - Systematic …, 2024 - academic.oup.com
Abstract Analysis of phylogenetic trees has become an essential tool in epidemiology.
Likelihood-based methods fit models to phylogenies to draw inferences about the …

An updated phylogeography and population dynamics of porcine circovirus 2 genotypes: are they reaching an equilibrium?

G Franzo, CM Tucciarone, M Legnardi… - Frontiers in …, 2024 - frontiersin.org
Introduction Porcine circovirus 2 (PCV2) emerged more than three decades ago as one of
the most impactful pathogens in the swine industry. Despite being a DNA virus, one of the …

Dynamics of eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States

V Hill, RT Koch, SM Bialosuknia, K Ngo, SD Zink… - Current Biology, 2023 - cell.com
Eastern equine encephalitis virus (EEEV) causes a rare but severe disease in horses and
humans and is maintained in an enzootic transmission cycle between songbirds and …

Reconstruction of avian Reovirus history and dispersal patterns: a Phylodynamic study

G Franzo, CM Tucciarone, G Faustini, F Poletto… - Viruses, 2024 - mdpi.com
Avian reovirus (ARV) infection can cause significant losses to the poultry industry. Disease
control has traditionally been attempted mainly through vaccination. However, the increase …

Phylodynamic approaches to studying avian influenza virus

L Carnegie, J Raghwani, G Fournié, SC Hill - Avian Pathology, 2023 - Taylor & Francis
Avian influenza viruses can cause severe disease in domestic and wild birds and are a
pandemic threat. Phylodynamics is the study of how epidemiological, evolutionary, and …