Natural product drug discovery in the artificial intelligence era
Natural products (NPs) are primarily recognized as privileged structures to interact with
protein drug targets. Their unique characteristics and structural diversity continue to marvel …
protein drug targets. Their unique characteristics and structural diversity continue to marvel …
Cheminformatics in natural product‐based drug discovery
This review seeks to provide a timely survey of the scope and limitations of cheminformatics
methods in natural product‐based drug discovery. Following an overview of data resources …
methods in natural product‐based drug discovery. Following an overview of data resources …
DeepScaffold: a comprehensive tool for scaffold-based de novo drug discovery using deep learning
The ultimate goal of drug design is to find novel compounds with desirable pharmacological
properties. Designing molecules retaining particular scaffolds as their core structures is an …
properties. Designing molecules retaining particular scaffolds as their core structures is an …
Extending the nested model for user-centric XAI: A design study on GNN-based drug repurposing
Whether AI explanations can help users achieve specific tasks efficiently (ie, usable
explanations) is significantly influenced by their visual presentation. While many techniques …
explanations) is significantly influenced by their visual presentation. While many techniques …
Antifungal drug repurposing
JH Kim, LW Cheng, KL Chan, CC Tam, N Mahoney… - Antibiotics, 2020 - mdpi.com
Control of fungal pathogens is increasingly problematic due to the limited number of
effective drugs available for antifungal therapy. Conventional antifungal drugs could also …
effective drugs available for antifungal therapy. Conventional antifungal drugs could also …
Updates on drug designing approach through computational strategies: a review
The drug discovery and development (DDD) process in pursuit of novel drug candidates is a
challenging procedure requiring lots of time and resources. Therefore, computer-aided drug …
challenging procedure requiring lots of time and resources. Therefore, computer-aided drug …
Synergy between machine learning and natural products cheminformatics: Application to the lead discovery of anthraquinone derivatives
Cheminformatics utilizing machine learning (ML) techniques have opened up a new horizon
in drug discovery. This is owing to vast chemical space expansion with rocketing numbers of …
in drug discovery. This is owing to vast chemical space expansion with rocketing numbers of …
[HTML][HTML] Genomic big data hitting the storage bottleneck
L Papageorgiou, P Eleni, S Raftopoulou… - EMBnet …, 2018 - ncbi.nlm.nih.gov
During the last decades, there is a vast data explosion in bioinformatics. Big data centres are
trying to face this data crisis, reaching high storage capacity levels. Although several …
trying to face this data crisis, reaching high storage capacity levels. Although several …
Splitting chemical structure data sets for federated privacy-preserving machine learning
J Simm, L Humbeck, A Zalewski, N Sturm… - Journal of …, 2021 - Springer
With the increase in applications of machine learning methods in drug design and related
fields, the challenge of designing sound test sets becomes more and more prominent. The …
fields, the challenge of designing sound test sets becomes more and more prominent. The …
Computational approaches to enzyme inhibition by marine natural products in the search for new drugs
F Gago - Marine Drugs, 2023 - mdpi.com
The exploration of biologically relevant chemical space for the discovery of small bioactive
molecules present in marine organisms has led not only to important advances in certain …
molecules present in marine organisms has led not only to important advances in certain …