Natural product drug discovery in the artificial intelligence era

FI Saldívar-González, VD Aldas-Bulos… - Chemical …, 2022 - pubs.rsc.org
Natural products (NPs) are primarily recognized as privileged structures to interact with
protein drug targets. Their unique characteristics and structural diversity continue to marvel …

Cheminformatics in natural product‐based drug discovery

Y Chen, J Kirchmair - Molecular Informatics, 2020 - Wiley Online Library
This review seeks to provide a timely survey of the scope and limitations of cheminformatics
methods in natural product‐based drug discovery. Following an overview of data resources …

DeepScaffold: a comprehensive tool for scaffold-based de novo drug discovery using deep learning

Y Li, J Hu, Y Wang, J Zhou, L Zhang… - Journal of chemical …, 2019 - ACS Publications
The ultimate goal of drug design is to find novel compounds with desirable pharmacological
properties. Designing molecules retaining particular scaffolds as their core structures is an …

Extending the nested model for user-centric XAI: A design study on GNN-based drug repurposing

Q Wang, K Huang, P Chandak, M Zitnik… - … on Visualization and …, 2022 - ieeexplore.ieee.org
Whether AI explanations can help users achieve specific tasks efficiently (ie, usable
explanations) is significantly influenced by their visual presentation. While many techniques …

Antifungal drug repurposing

JH Kim, LW Cheng, KL Chan, CC Tam, N Mahoney… - Antibiotics, 2020 - mdpi.com
Control of fungal pathogens is increasingly problematic due to the limited number of
effective drugs available for antifungal therapy. Conventional antifungal drugs could also …

Updates on drug designing approach through computational strategies: a review

I Azad, T Khan, N Ahmad, AR Khan, Y Akhter - Future Science OA, 2023 - Taylor & Francis
The drug discovery and development (DDD) process in pursuit of novel drug candidates is a
challenging procedure requiring lots of time and resources. Therefore, computer-aided drug …

Synergy between machine learning and natural products cheminformatics: Application to the lead discovery of anthraquinone derivatives

S Moshawih, HP Goh, N Kifli, AC Idris… - Chemical Biology & …, 2022 - Wiley Online Library
Cheminformatics utilizing machine learning (ML) techniques have opened up a new horizon
in drug discovery. This is owing to vast chemical space expansion with rocketing numbers of …

[HTML][HTML] Genomic big data hitting the storage bottleneck

L Papageorgiou, P Eleni, S Raftopoulou… - EMBnet …, 2018 - ncbi.nlm.nih.gov
During the last decades, there is a vast data explosion in bioinformatics. Big data centres are
trying to face this data crisis, reaching high storage capacity levels. Although several …

Splitting chemical structure data sets for federated privacy-preserving machine learning

J Simm, L Humbeck, A Zalewski, N Sturm… - Journal of …, 2021 - Springer
With the increase in applications of machine learning methods in drug design and related
fields, the challenge of designing sound test sets becomes more and more prominent. The …

Computational approaches to enzyme inhibition by marine natural products in the search for new drugs

F Gago - Marine Drugs, 2023 - mdpi.com
The exploration of biologically relevant chemical space for the discovery of small bioactive
molecules present in marine organisms has led not only to important advances in certain …