RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro… - Chemical …, 2018 - ACS Publications
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

Designer aminoglycosides: the race to develop improved antibiotics and compounds for the treatment of human genetic diseases

M Hainrichson, I Nudelman, T Baasov - Organic & biomolecular …, 2008 - pubs.rsc.org
Aminoglycosides are highly potent, broad-spectrum antibiotics that exert their bactericidal
therapeutic effect by selectively binding to the decoding aminoacyl site (A-site) of the …

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

M Parisien, F Major - Nature, 2008 - nature.com
The classical RNA secondary structure model considers A· U and G· C Watson–Crick as well
as G· U wobble base pairs. Here we substitute it for a new one, in which sets of nucleotide …

Mitochondrial deafness alleles confer misreading of the genetic code

SN Hobbie, CM Bruell, S Akshay… - Proceedings of the …, 2008 - National Acad Sciences
Despite the fact that important genetic diseases are caused by mutant mitochondrial
ribosomes, the molecular mechanisms by which such ribosomes result in a clinical …

Eukaryotic ribosomal RNA determinants of aminoglycoside resistance and their role in translational fidelity

H Fan-Minogue, DM Bedwell - Rna, 2008 - rnajournal.cshlp.org
Recent studies of prokaryotic ribosomes have dramatically increased our knowledge of
ribosomal RNA (rRNA) structure, functional centers, and their interactions with antibiotics …

Engineering the rRNA decoding site of eukaryotic cytosolic ribosomes in bacteria

SN Hobbie, SK Kalapala, S Akshay… - Nucleic acids …, 2007 - academic.oup.com
Structural and genetic studies on prokaryotic ribosomes have provided important insights
into fundamental aspects of protein synthesis and translational control and its interaction …

A molecular dynamics simulation study of an aminoglycoside/A-site RNA complex: conformational and hydration patterns

AC Vaiana, E Westhof, P Auffinger - Biochimie, 2006 - Elsevier
Aminoglycoside antibiotics interfere with the translation mechanism by binding to the tRNA
decoding site of the 16S ribosomal RNA. Crystallographic structures of aminoglycosides …

Towards the discovery of drug-like RNA ligands?

N Foloppe, N Matassova, F Aboul-Ela - Drug discovery today, 2006 - Elsevier
Targeting RNA with small molecule drugs is an area of great potential for therapeutic
treatment of infections and possibly genetic and autoimmune diseases. However, a mature …

Pharmaceuticals targeting nonsense mutations in genetic diseases: progress in development

SM Rowe, JP Clancy - BioDrugs, 2009 - Springer
Premature termination codons (PTCs) are a cause of numerous genetic disorders spanning
diseases that affect children and adults, and are produced by base pair substitutions that …

Chemical modifications reduce auditory cell damage induced by aminoglycoside antibiotics

SL Zada, BB Baruch, L Simhaev, H Engel… - Journal of the …, 2020 - ACS Publications
Although aminoglycoside antibiotics are effective against Gram-negative infections, these
drugs often cause irreversible hearing damage. Binding to the decoding site of the …