RNA structural dynamics as captured by molecular simulations: a comprehensive overview
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …
pluripotent chemical species in molecular biology, and its functions are intimately linked to …
Designer aminoglycosides: the race to develop improved antibiotics and compounds for the treatment of human genetic diseases
M Hainrichson, I Nudelman, T Baasov - Organic & biomolecular …, 2008 - pubs.rsc.org
Aminoglycosides are highly potent, broad-spectrum antibiotics that exert their bactericidal
therapeutic effect by selectively binding to the decoding aminoacyl site (A-site) of the …
therapeutic effect by selectively binding to the decoding aminoacyl site (A-site) of the …
The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
The classical RNA secondary structure model considers A· U and G· C Watson–Crick as well
as G· U wobble base pairs. Here we substitute it for a new one, in which sets of nucleotide …
as G· U wobble base pairs. Here we substitute it for a new one, in which sets of nucleotide …
Mitochondrial deafness alleles confer misreading of the genetic code
SN Hobbie, CM Bruell, S Akshay… - Proceedings of the …, 2008 - National Acad Sciences
Despite the fact that important genetic diseases are caused by mutant mitochondrial
ribosomes, the molecular mechanisms by which such ribosomes result in a clinical …
ribosomes, the molecular mechanisms by which such ribosomes result in a clinical …
Eukaryotic ribosomal RNA determinants of aminoglycoside resistance and their role in translational fidelity
Recent studies of prokaryotic ribosomes have dramatically increased our knowledge of
ribosomal RNA (rRNA) structure, functional centers, and their interactions with antibiotics …
ribosomal RNA (rRNA) structure, functional centers, and their interactions with antibiotics …
Engineering the rRNA decoding site of eukaryotic cytosolic ribosomes in bacteria
SN Hobbie, SK Kalapala, S Akshay… - Nucleic acids …, 2007 - academic.oup.com
Structural and genetic studies on prokaryotic ribosomes have provided important insights
into fundamental aspects of protein synthesis and translational control and its interaction …
into fundamental aspects of protein synthesis and translational control and its interaction …
A molecular dynamics simulation study of an aminoglycoside/A-site RNA complex: conformational and hydration patterns
Aminoglycoside antibiotics interfere with the translation mechanism by binding to the tRNA
decoding site of the 16S ribosomal RNA. Crystallographic structures of aminoglycosides …
decoding site of the 16S ribosomal RNA. Crystallographic structures of aminoglycosides …
Towards the discovery of drug-like RNA ligands?
N Foloppe, N Matassova, F Aboul-Ela - Drug discovery today, 2006 - Elsevier
Targeting RNA with small molecule drugs is an area of great potential for therapeutic
treatment of infections and possibly genetic and autoimmune diseases. However, a mature …
treatment of infections and possibly genetic and autoimmune diseases. However, a mature …
Pharmaceuticals targeting nonsense mutations in genetic diseases: progress in development
SM Rowe, JP Clancy - BioDrugs, 2009 - Springer
Premature termination codons (PTCs) are a cause of numerous genetic disorders spanning
diseases that affect children and adults, and are produced by base pair substitutions that …
diseases that affect children and adults, and are produced by base pair substitutions that …
Chemical modifications reduce auditory cell damage induced by aminoglycoside antibiotics
Although aminoglycoside antibiotics are effective against Gram-negative infections, these
drugs often cause irreversible hearing damage. Binding to the decoding site of the …
drugs often cause irreversible hearing damage. Binding to the decoding site of the …