Breaking the chains: deubiquitylating enzyme specificity begets function

MJ Clague, S Urbé, D Komander - Nature reviews Molecular cell …, 2019 - nature.com
The deubiquitylating enzymes (DUBs, also known as deubiquitylases or deubiquitinases)
maintain the dynamic state of the cellular ubiquitome by releasing conjugated ubiquitin from …

Ubiquitin ligases: guardians of mammalian development

DA Cruz Walma, Z Chen, AN Bullock… - … Reviews Molecular Cell …, 2022 - nature.com
Mammalian development demands precision. Millions of molecules must be properly
located in temporal order, and their function regulated, to orchestrate important steps in cell …

Ubiquitin-like protein conjugation: structures, chemistry, and mechanism

L Cappadocia, CD Lima - Chemical reviews, 2018 - ACS Publications
Ubiquitin-like proteins (Ubl's) are conjugated to target proteins or lipids to regulate their
activity, stability, subcellular localization, or macromolecular interactions. Similar to ubiquitin …

Ubiquitin ligases: structure, function, and regulation

N Zheng, N Shabek - Annual review of biochemistry, 2017 - annualreviews.org
Ubiquitin E3 ligases control every aspect of eukaryotic biology by promoting protein
ubiquitination and degradation. At the end of a three-enzyme cascade, ubiquitin ligases …

Emerging functions of branched ubiquitin chains

ME French, CF Koehler, T Hunter - Cell discovery, 2021 - nature.com
Ubiquitylation is a critical post-translational modification that controls a wide variety of
processes in eukaryotes. Ubiquitin chains of different topologies are specialized for different …

Structural snapshots along K48-linked ubiquitin chain formation by the HECT E3 UBR5

LA Hehl, D Horn-Ghetko, JR Prabu, R Vollrath… - Nature Chemical …, 2024 - nature.com
Ubiquitin (Ub) chain formation by homologous to E6AP C-terminus (HECT)-family E3 ligases
regulates vast biology, yet the structural mechanisms remain unknown. We used chemistry …

The ubiquitin code in the ubiquitin-proteasome system and autophagy

YT Kwon, A Ciechanover - Trends in biochemical sciences, 2017 - cell.com
The conjugation of the 76 amino acid protein ubiquitin to other proteins can alter the
metabolic stability or non-proteolytic functions of the substrate. Once attached to a substrate …

Assembly and function of heterotypic ubiquitin chains in cell-cycle and protein quality control

RG Yau, K Doerner, ER Castellanos, DL Haakonsen… - Cell, 2017 - cell.com
Posttranslational modification with ubiquitin chains controls cell fate in all eukaryotes.
Depending on the connectivity between subunits, different ubiquitin chain types trigger …

[HTML][HTML] Crosstalk and interplay between the ubiquitin-proteasome system and autophagy

CH Ji, YT Kwon - Molecules and cells, 2017 - Elsevier
Proteolysis in eukaryotic cells is mainly mediated by the ubiquitin (Ub)-proteasome system
(UPS) and the autophagylysosome system (hereafter autophagy). The UPS is a selective …

Quantifying the heterogeneity of macromolecular machines by mass photometry

A Sonn-Segev, K Belacic, T Bodrug, G Young… - Nature …, 2020 - nature.com
Sample purity is central to in vitro studies of protein function and regulation, and to the
efficiency and success of structural studies using techniques such as x-ray crystallography …