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5pm: Secure pattern matching
J Baron, K El Defrawy, K Minkovich… - Journal of computer …, 2013 - content.iospress.com
In this paper we consider the problem of secure pattern matching that allows single-
character wildcards and substring matching in the malicious (stand-alone) setting. Our …
character wildcards and substring matching in the malicious (stand-alone) setting. Our …
Parallelizing exact and approximate string matching via inclusive scan on a GPU
Y Mitani, F Ino, K Hagihara - IEEE Transactions on Parallel and …, 2016 - ieeexplore.ieee.org
In this study, to substantially improve the runtimes of exact and approximate string matching
algorithms, we propose a tribrid parallel method for bit-parallel algorithms such as the Shift …
algorithms, we propose a tribrid parallel method for bit-parallel algorithms such as the Shift …
State-of-the-art GPGPU applications in bioinformatics
N Papangelopoulos, D Vlachakis, A Filntisi… - International Journal of …, 2013 - igi-global.com
The exponential growth of available biological data in recent years coupled with their
increasing complexity has made their analysis a computationally challenging process …
increasing complexity has made their analysis a computationally challenging process …
Accelerating dna sequence analysis using intel (r) xeon phi (tm)
Genetic information is increasing exponentially, doubling every 18 months. Analyzing this
information within a reasonable amount of time requires parallel computing resources. While …
information within a reasonable amount of time requires parallel computing resources. While …
Accelerating pattern matching with CPU-GPU collaborative computing
Pattern matching algorithms are used in several areas such as network security,
bioinformatics and text mining. In order to support large data and pattern sets, these …
bioinformatics and text mining. In order to support large data and pattern sets, these …
A machine learning approach for accelerating DNA sequence analysis
The DNA sequence analysis is a data and computationally intensive problem and therefore
demands suitable parallel computing resources and algorithms. In this paper, we describe …
demands suitable parallel computing resources and algorithms. In this paper, we describe …
Efficient pattern matching on CPU-GPU heterogeneous systems
Pattern matching algorithms are used in several areas such as network security,
bioinformatics and text mining, where the volume of data is growing rapidly. In order to …
bioinformatics and text mining, where the volume of data is growing rapidly. In order to …
Transcription Factor Binding Site Prediction Using CnNet Approach
Controlling the gene expression is the most important development in a living organism,
which makes it easier to find different kinds of diseases and their causes. It's very difficult to …
which makes it easier to find different kinds of diseases and their causes. It's very difficult to …
High performance string matching for security applications
NP Tran, M Lee - International Conference on ICT for Smart …, 2013 - ieeexplore.ieee.org
Aho-Corasick (AC) algorithm is a commonly used string matching algorithm. It performs
multiple patterns matching for computer and network security applications. These …
multiple patterns matching for computer and network security applications. These …
Memory efficient parallelization for Aho-Corasick algorithm on a GPU
Pattern matching is a commonly used operation in many applications including image
processing, computer and network security, bioinformatics, among many others. Aho …
processing, computer and network security, bioinformatics, among many others. Aho …