Protein control of photochemistry and transient intermediates in phytochromes

G Salvadori, V Macaluso, G Pellicci, L Cupellini… - Nature …, 2022 - nature.com
Phytochromes are ubiquitous photoreceptors responsible for sensing light in plants, fungi
and bacteria. Their photoactivation is initiated by the photoisomerization of the embedded …

Light-induced protein structural dynamics in bacteriophytochrome revealed by time-resolved x-ray solution scattering

SJ Lee, TW Kim, JG Kim, C Yang, SR Yun, C Kim… - Science …, 2022 - science.org
Bacteriophytochromes (BphPs) are photoreceptors that regulate a wide range of biological
mechanisms via red light–absorbing (Pr)–to–far-red light–absorbing (Pfr) reversible …

The photocycle of bacteriophytochrome is initiated by counterclockwise chromophore isomerization

D Morozov, V Modi, V Mironov… - The Journal of Physical …, 2022 - ACS Publications
Photoactivation of bacteriophytochrome involves a cis–trans photoisomerization of a
biliverdin chromophore, but neither the precise sequence of events nor the direction of the …

Reversible molecular motional switch based on circular photoactive protein oligomers exhibits unexpected photo-induced contraction

SJ Lee, Y Kim, TW Kim, C Yang, K Thamilselvan… - Cell Reports Physical …, 2021 - cell.com
Molecular switches alterable between two stable states by environmental stimuli, such as
light and temperature, offer the potential for controlling biological functions. Here, we report …

Conserved histidine and tyrosine determine spectral responses through the water network in Deinococcus radiodurans phytochrome

H Lehtivuori, J Rumfeldt, S Mustalahti… - Photochemical & …, 2022 - Springer
Phytochromes are red light-sensing photoreceptor proteins that bind a bilin chromophore.
Here, we investigate the role of a conserved histidine (H260) and tyrosine (Y263) in the …

Elucidating ultrafast multiphasic dynamics in the photoisomerization of cyanobacteriochrome

D Wang, X Li, L Wang, X Yang… - The journal of physical …, 2020 - ACS Publications
Understanding photoisomerization dynamics in cyanobacteriochromes is important to the
development of optical agents in near-infrared biological imaging and optogenetics. Here …

Ultrafast Primary Dynamics and Isomerization Mechanism of a Far-Red Sensing Cyanobacteriochrome

K Niu, D Wang, Y Zhang, L Biju, N Liu… - The Journal of …, 2024 - ACS Publications
Far-red cyanobacteriochromes (CBCRs) are bilin-based photosensory proteins that promise
to be novel optical agents in optogenetics and deep tissue imaging. Recent structural …

An engineered biliverdin-compatible cyanobacteriochrome enables a unique ultrafast reversible photoswitching pathway

SR Tachibana, L Tang, L Zhu, Y Takeda… - International Journal of …, 2021 - mdpi.com
Cyanobacteriochromes (CBCRs) are promising optogenetic tools for their diverse
absorption properties with a single compact cofactor-binding domain. We previously …

Development of bright red‐shifted miRFP704nano using structural analysis of miRFPnano proteins

OS Oliinyk, S Pletnev, M Baloban… - Protein …, 2023 - Wiley Online Library
We recently converted the GAF domain of NpR3784 cyanobacteriochrome into near‐
infrared (NIR) fluorescent proteins (FPs). Unlike cyanobacterichrome, which incorporates …

[HTML][HTML] Conserved tyrosine in phytochromes controls the photodynamics through steric demand and hydrogen bonding capabilities

T Fischer, L Köhler, PD Engel, C Song… - … et Biophysica Acta (BBA …, 2023 - Elsevier
Using ultrafast spectroscopy and site-specific mutagenesis, we demonstrate the central role
of a conserved tyrosine within the chromophore binding pocket in the forward (P r→ P fr) …