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[HTML][HTML] High-content CRISPR screening
CRISPR screens are a powerful source of biological discovery, enabling the unbiased
interrogation of gene function in a wide range of applications and species. In pooled …
interrogation of gene function in a wide range of applications and species. In pooled …
Chronos: a cell population dynamics model of CRISPR experiments that improves inference of gene fitness effects
CRISPR loss of function screens are powerful tools to interrogate biology but exhibit a
number of biases and artifacts that can confound the results. Here, we introduce Chronos …
number of biases and artifacts that can confound the results. Here, we introduce Chronos …
Prioritization of cancer therapeutic targets using CRISPR–Cas9 screens
Functional genomics approaches can overcome limitations—such as the lack of
identification of robust targets and poor clinical efficacy—that hamper cancer drug …
identification of robust targets and poor clinical efficacy—that hamper cancer drug …
[HTML][HTML] Pan-cancer proteomic map of 949 human cell lines
The proteome provides unique insights into disease biology beyond the genome and
transcriptome. A lack of large proteomic datasets has restricted the identification of new …
transcriptome. A lack of large proteomic datasets has restricted the identification of new …
A benchmark of algorithms for the analysis of pooled CRISPR screens
Genome-wide pooled CRISPR-Cas-mediated knockout, activation, and repression screens
are powerful tools for functional genomic investigations. Despite their increasing importance …
are powerful tools for functional genomic investigations. Despite their increasing importance …
Integrated cross-study datasets of genetic dependencies in cancer
CRISPR-Cas9 viability screens are increasingly performed at a genome-wide scale across
large panels of cell lines to identify new therapeutic targets for precision cancer therapy …
large panels of cell lines to identify new therapeutic targets for precision cancer therapy …
[HTML][HTML] A comprehensive clinically informed map of dependencies in cancer cells and framework for target prioritization
Genetic screens in cancer cell lines inform gene function and drug discovery. More
comprehensive screen datasets with multi-omics data are needed to enhance opportunities …
comprehensive screen datasets with multi-omics data are needed to enhance opportunities …
Agreement between two large pan-cancer CRISPR-Cas9 gene dependency data sets
Genome-scale CRISPR-Cas9 viability screens performed in cancer cell lines provide a
systematic approach to identify cancer dependencies and new therapeutic targets. As …
systematic approach to identify cancer dependencies and new therapeutic targets. As …
High-resolution genome-wide map** of chromosome-arm-scale truncations induced by CRISPR–Cas9 editing
Clustered regularly interspaced short palindromic repeats (CRISPR)–CRISPR-associated
protein 9 (Cas9) is a powerful tool for introducing targeted mutations in DNA, but recent …
protein 9 (Cas9) is a powerful tool for introducing targeted mutations in DNA, but recent …
Multiplex enCas12a screens detect functional buffering among paralogs otherwise masked in monogenic Cas9 knockout screens
Abstract Background Pooled library CRISPR/Cas9 knockout screening across hundreds of
cell lines has identified genes whose disruption leads to fitness defects, a critical step in …
cell lines has identified genes whose disruption leads to fitness defects, a critical step in …