Situating ecology as a big-data science: Current advances, challenges, and solutions

SS Farley, A Dawson, SJ Goring, JW Williams - BioScience, 2018 - academic.oup.com
Ecology has joined a world of big data. Two complementary frameworks define big data:
data that exceed the analytical capacities of individuals or disciplines or the “Four Vs” axes …

Inferring microbiota functions from taxonomic genes: a review

C Djemiel, PA Maron, S Terrat, S Dequiedt… - …, 2022 - academic.oup.com
Deciphering microbiota functions is crucial to predict ecosystem sustainability in response to
global change. High-throughput sequencing at the individual or community level has …

Integrated metagenomics and molecular ecological network analysis of bacterial community composition during the phytoremediation of cadmium-contaminated soils …

Z Chen, Y Zheng, C Ding, X Ren, J Yuan, F Sun… - … and environmental safety, 2017 - Elsevier
Two energy crops (maize and soybean) were used in the remediation of cadmium-
contaminated soils. These crops were used because they are fast growing, have a large …

Model microbial consortia as tools for understanding complex microbial communities

S Haruta, K Yamamoto - Current Genomics, 2018 - benthamdirect.com
A major biological challenge in the postgenomic era has been untangling the composition
and functions of microbes that inhabit complex communities or microbiomes. Multi-omics …

An integrated, modular approach to data science education in microbiology

KA Dill-McFarland, SG König, F Mazel… - PLoS computational …, 2021 - journals.plos.org
We live in an increasingly data-driven world, where high-throughput sequencing and mass
spectrometry platforms are transforming biology into an information science. This has shifted …

Metabolic pathway inference using multi-label classification with rich pathway features

AR MA Basher, RJ McLaughlin… - PLOS Computational …, 2020 - journals.plos.org
Metabolic inference from genomic sequence information is a necessary step in determining
the capacity of cells to make a living in the world at different levels of biological organization …