Maturing glycoproteomics technologies provide unique structural insights into the N-glycoproteome and its regulation in health and disease

M Thaysen-Andersen, NH Packer, BL Schulz - Molecular & Cellular …, 2016 - ASBMB
The glycoproteome remains severely understudied because of significant analytical
challenges associated with glycoproteomics, the system-wide analysis of intact …

Current challenges in software solutions for mass spectrometry-based quantitative proteomics

S Cappadona, PR Baker, PR Cutillas, AJR Heck… - Amino acids, 2012 - Springer
Mass spectrometry-based proteomics has evolved as a high-throughput research field over
the past decade. Significant advances in instrumentation, and the ability to produce huge …

Mitochondrial CaMKII causes adverse metabolic reprogramming and dilated cardiomyopathy

ED Luczak, Y Wu, JM Granger, MA Joiner… - Nature …, 2020 - nature.com
Despite the clear association between myocardial injury, heart failure and depressed
myocardial energetics, little is known about upstream signals responsible for remodeling …

Label-based and label-free strategies for protein quantitation

S Anand, M Samuel, CS Ang, S Keerthikumar… - Proteome …, 2017 - Springer
The precise quantification of changes between various physiological states in a biological
system is highly complex in nature. Over the past few years, in combination with classical …

Phosphoproteome of the cyanobacterium Synechocystis sp. PCC 6803 and its dynamics during nitrogen starvation

P Spaet, B Maček, K Forchhammer - Frontiers in Microbiology, 2015 - frontiersin.org
Cyanobacteria have shaped the earth's biosphere as the first oxygenic photoautotrophs and
still play an important role in many ecosystems. The ability to adapt to changing …

Identification of chlamydomonas central core centriolar proteins reveals a role for human WDR90 in ciliogenesis

V Hamel, E Steib, R Hamelin, F Armand, S Borgers… - Current Biology, 2017 - cell.com
Centrioles are evolutionarily conserved macromolecular structures that are fundamental to
form cilia, flagella, and centrosomes. Centrioles are 9-fold symmetrical microtubule-based …

Five-plex isotope dimethyl labeling for quantitative proteomics

Y Wu, F Wang, Z Liu, H Qin, C Song, J Huang… - Chemical …, 2014 - pubs.rsc.org
Stable isotope dimethyl labeling, a widely used method for quantitative proteomics, was
extended to five channels for the first time. Comprehensive proteome and phosphoproteome …

Natural product proteomining, a quantitative proteomics platform, allows rapid discovery of biosynthetic gene clusters for different classes of natural products

J Gubbens, H Zhu, G Girard, L Song, BI Florea… - Chemistry & biology, 2014 - cell.com
Information on gene clusters for natural product biosynthesis is accumulating rapidly
because of the current boom of available genome sequencing data. However, linking a …

Stable isotope dimethyl labelling for quantitative proteomics and beyond

JL Hsu, SH Chen - … Transactions of the Royal Society A …, 2016 - royalsocietypublishing.org
Stable-isotope reductive dimethylation, a cost-effective, simple, robust, reliable and easy-to-
multiplex labelling method, is widely applied to quantitative proteomics using liquid …

Characterization of cell glycocalyx with mass spectrometry methods

Q Li, Y **e, M Wong, CB Lebrilla - Cells, 2019 - mdpi.com
The cell membrane plays an important role in protecting the cell from its extracellular
environment. As such, extensive work has been devoted to studying its structure and …