Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
An updated classification of cyanobacterial orders and families based on phylogenomic and polyphasic analysis
O Strunecký, AP Ivanova, J Mareš - Journal of Phycology, 2023 - Wiley Online Library
Cyanobacterial taxonomy is facing a period of rapid changes thanks to the ease of 16S
rRNA gene sequencing and established workflows for description of new taxa. Since the last …
rRNA gene sequencing and established workflows for description of new taxa. Since the last …
From telomere to telomere: The transcriptional and epigenetic state of human repeat elements
SJ Hoyt, JM Storer, GA Hartley, PGS Grady… - Science, 2022 - science.org
Mobile elements and repetitive genomic regions are sources of lineage-specific genomic
innovation and uniquely fingerprint individual genomes. Comprehensive analyses of such …
innovation and uniquely fingerprint individual genomes. Comprehensive analyses of such …
The 2019‐new coronavirus epidemic: evidence for virus evolution
There is a worldwide concern about the new coronavirus 2019‐nCoV as a global public
health threat. In this article, we provide a preliminary evolutionary and molecular …
health threat. In this article, we provide a preliminary evolutionary and molecular …
The source of the Black Death in fourteenth-century central Eurasia
The origin of the medieval Black Death pandemic (ad 1346–1353) has been a topic of
continuous investigation because of the pandemic's extensive demographic impact and long …
continuous investigation because of the pandemic's extensive demographic impact and long …
Million-year-old DNA sheds light on the genomic history of mammoths
Temporal genomic data hold great potential for studying evolutionary processes such as
speciation. However, sampling across speciation events would, in many cases, require …
speciation. However, sampling across speciation events would, in many cases, require …
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models
ModelTest-NG is a reimplementation from scratch of jModelTest and ProtTest, two popular
tools for selecting the best-fit nucleotide and amino acid substitution models, respectively …
tools for selecting the best-fit nucleotide and amino acid substitution models, respectively …
The numbers of fungi: are the most speciose genera truly diverse?
Fungi play vital roles in ecosystems as endophytes, pathogens and saprobes. The current
estimate of fungal diversity is highly uncertain, ranging from 1.5 to 12 million, but only …
estimate of fungal diversity is highly uncertain, ranging from 1.5 to 12 million, but only …
Are pangolins the intermediate host of the 2019 novel coronavirus (SARS-CoV-2)?
The outbreak of a novel corona Virus Disease 2019 (COVID-19) in the city of Wuhan, China
has resulted in more than 1.7 million laboratory confirmed cases all over the world. Recent …
has resulted in more than 1.7 million laboratory confirmed cases all over the world. Recent …
Evolutionary history, potential intermediate animal host, and cross‐species analyses of SARS‐CoV‐2
X Li, J Zai, Q Zhao, Q Nie, Y Li, BT Foley… - Journal of medical …, 2020 - Wiley Online Library
To investigate the evolutionary history of the recent outbreak of severe acute respiratory
syndrome coronavirus 2 (SARS‐CoV‐2) in China, a total of 70 genomes of virus strains from …
syndrome coronavirus 2 (SARS‐CoV‐2) in China, a total of 70 genomes of virus strains from …