The evolution of transcriptional regulation in eukaryotes

GA Wray, MW Hahn, E Abouheif… - Molecular biology …, 2003 - academic.oup.com
Gene expression is central to the genotype-phenotype relationship in all organisms, and it is
an important component of the genetic basis for evolutionary change in diverse aspects of …

A glimpse into the molecular entrails of endoderm formation

DYR Stainier - Genes & development, 2002 - genesdev.cshlp.org
During organogenesis, the endoderm forms the epithelial lining of the primitive gut tube from
which the alimentary canal and associated organs, such as the liver and pancreas, develop …

Cis-regulatory interfaces reveal the molecular mechanisms underlying the notochord gene regulatory network of Ciona

LJ Negrón-Piñeiro, Y Wu, S Popsuj… - Nature …, 2024 - nature.com
Tissue-specific gene expression is fundamental in development and evolution, and is
mediated by transcription factors and by the cis-regulatory regions (enhancers) that they …

It takes guts: the Drosophila hindgut as a model system for organogenesis

JA Lengyel, DD Iwaki - Developmental biology, 2002 - Elsevier
The Drosophila hindgut is fruitful territory for investigation of events common to many types
of organogenesis. The development of the Drosophila hindgut provides, in microcosm, a …

The ascidian as a model organism in developmental and evolutionary biology

JC Corbo, A Di Gregorio, M Levine - Cell, 2001 - cell.com
Joseph C. Corbo, 1, 3 Anna Di Gregorio, 2 and Michael Levine2, 3 1Department of
Pathology Brigham and Women's Hospital and Harvard Medical School Boston …

Specification of embryonic axis and mosaic development in ascidians

H Nishida - Developmental dynamics: an official publication of …, 2005 - Wiley Online Library
Abstract Setting up future body axes is the first important event before and at the beginning
of embryogenesis. The ascidian embryo is a classic model that has been used to gain …

A molecular analysis of ascidian metamorphosis reveals activation of an innate immune response

B Davidson, BJ Swalla - 2002 - journals.biologists.com
Ascidian metamorphosis represents a powerful model for comparative work on chordate
development that has remained largely unexplored. We isolated transcripts differentially …

Ciona intestinalis: Chordate development made simple

YJ Passamaneck, A Di Gregorio - Developmental dynamics: an …, 2005 - Wiley Online Library
Thanks to their transparent and rapidly develo** mosaic embryos, ascidians (or sea
squirts) have been a model system for embryological studies for over a century. Recently …

Single-cell transcriptomic studies unveil potential nodes of the notochord gene regulatory network

LJ Negrón-Piñeiro, A Di Gregorio - Integrative and Comparative …, 2024 - academic.oup.com
Transcription factors (TFs) are DNA-binding proteins able to modulate the timing, location,
and levels of gene expression by binding to regulatory DNA regions. Therefore, the …

[HTML][HTML] Evolution of the mechanisms and molecular control of endoderm formation

A Grapin-Botton, D Constam - Mechanisms of development, 2007 - Elsevier
Endoderm differentiation and movements are of fundamental importance not only for
subsequent morphogenesis of the digestive tract but also to enable normal patterning and …