Is H3K4me3 instructive for transcription activation?

FS Howe, H Fischl, SC Murray, J Mellor - Bioessays, 2017 - Wiley Online Library
Tri‐methylation of lysine 4 on histone H3 (H3K4me3) is a near‐universal chromatin
modification at the transcription start site of active genes in eukaryotes from yeast to man …

Chemically induced dimerization: reversible and spatiotemporal control of protein function in cells

S Voß, L Klewer, YW Wu - Current opinion in chemical biology, 2015 - Elsevier
Highlights•Novel orthogonal and reversible CID systems confer multiple layers of
manipulation.•Caged dimerizers allow control of protein function with spatiotemporal …

COOLAIR and PRC2 function in parallel to silence FLC during vernalization

M Nielsen, G Menon, Y Zhao… - Proceedings of the …, 2024 - National Acad Sciences
Noncoding transcription induces chromatin changes that can mediate environmental
responsiveness, but the causes and consequences of these mechanisms are still unclear …

Transcriptional neighborhoods regulate transcript isoform lengths and expression levels

AN Brooks, AL Hughes, S Clauder-Münster, LA Mitchell… - Science, 2022 - science.org
Sequence features of genes and their flanking regulatory regions are determinants of RNA
transcript isoform expression and have been used as context-independent plug-and-play …

Single-molecule imaging reveals a switch between spurious and functional ncRNA transcription

TL Lenstra, A Coulon, CC Chow, DR Larson - Molecular cell, 2015 - cell.com
Eukaryotic transcription is pervasive, and many of the resulting RNAs are non-coding. It is
unknown whether ubiquitous transcription is functional or simply reflects stochastic …

Biodegradation of phenol by Candida tropicalis sp.: Kinetics, identification of putative genes and reconstruction of catabolic pathways by genomic and transcriptomic …

Y He, Z Wang, T Li, X Peng, Y Tang, X Jia - Chemosphere, 2022 - Elsevier
Candida tropicalis sp. was isolated with predominant biodegradation capability to phenol
compounds, even with high concentration or in acid environment. The biodegradation of …

Intragenic enhancers attenuate host gene expression

S Cinghu, P Yang, JP Kosak, AE Conway, D Kumar… - Molecular cell, 2017 - cell.com
Eukaryotic gene transcription is regulated at many steps, including RNA polymerase II (Pol
II) recruitment, transcription initiation, promoter-proximal Pol II pause release, and …

Modulation of mRNA and lncRNA expression dynamics by the Set2–Rpd3S pathway

JH Kim, BB Lee, YM Oh, C Zhu, LM Steinmetz… - Nature …, 2016 - nature.com
H3K36 methylation by Set2 targets Rpd3S histone deacetylase to transcribed regions of
mRNA genes, repressing internal cryptic promoters and slowing elongation. Here we …

Selective suppression of antisense transcription by Set2-mediated H3K36 methylation

S Venkatesh, H Li, MM Gogol, JL Workman - Nature communications, 2016 - nature.com
Maintenance of a regular chromatin structure over the coding regions of genes occurs co-
transcriptionally via the 'chromatin resetting'pathway. One of the central players in this …

Paf1 has distinct roles in transcription elongation and differential transcript fate

H Fischl, FS Howe, A Furger, J Mellor - Molecular cell, 2017 - cell.com
RNA polymerase II (Pol2) movement through chromatin and the co-transcriptional
processing and fate of nascent transcripts is coordinated by transcription elongation factors …