CRISPR techniques and potential for the detection and discrimination of SARS-CoV-2 variants of concern

H **ao, J Hu, C Huang, W Feng, Y Liu… - TrAC Trends in …, 2023 - Elsevier
The continuing evolution of the SARS-CoV-2 virus has led to the emergence of many
variants, including variants of concern (VOCs). CRISPR-Cas systems have been used to …

Divergent SARS-CoV-2 variant emerges in white-tailed deer with deer-to-human transmission

B Pickering, O Lung, F Maguire, P Kruczkiewicz… - Nature …, 2022 - nature.com
Wildlife reservoirs of broad-host-range viruses have the potential to enable evolution of viral
variants that can emerge to infect humans. In North America, there is phylogenomic …

Outbreak. info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations

K Gangavarapu, AA Latif, JL Mullen, M Alkuzweny… - Nature …, 2023 - nature.com
In response to the emergence of SARS-CoV-2 variants of concern, the global scientific
community, through unprecedented effort, has sequenced and shared over 11 million …

White-tailed deer (Odocoileus virginianus) may serve as a wildlife reservoir for nearly extinct SARS-CoV-2 variants of concern

LC Caserta, M Martins, SL Butt… - Proceedings of the …, 2023 - pnas.org
The spillover of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) from
humans to white-tailed deer (WTD) and its ability to transmit from deer to deer raised …

The effects of amino acid substitution of spike protein and genomic recombination on the evolution of SARS-CoV-2

L Fang, J Xu, Y Zhao, J Fan, J Shen, W Liu… - Frontiers in …, 2023 - frontiersin.org
Over three years' pandemic of 2019 novel coronavirus disease (COVID-19), multiple
variants and novel subvariants have emerged successively, outcompeted earlier variants …

Taxonium, a web-based tool for exploring large phylogenetic trees

T Sanderson - Elife, 2022 - elifesciences.org
The COVID-19 pandemic has resulted in a step change in the scale of sequencing data, with
more genomes of SARS-CoV-2 having been sequenced than any other organism on earth …

Cross-reactivity assessment of vaccine-derived SARS-CoV-2 T cell responses against BA. 2.86 and JN. 1

MS Sohail, SF Ahmed, AA Quadeer, MR McKay - Viruses, 2024 - mdpi.com
The SARS-CoV-2 Omicron sub-variants BA. 2.86 and JN. 1 contain multiple mutations in the
spike protein that were not present in previous variants of concern and Omicron sub …

Highly divergent white-tailed deer SARS-CoV-2 with potential deer-to-human transmission

B Pickering, O Lung, F Maguire, P Kruczkiewicz… - BioRxiv, 2022 - biorxiv.org
Wildlife reservoirs of SARS-CoV-2 can lead to viral adaptation and spillback from wildlife to
humans. In North America, there is evidence of spillover of SARS-CoV-2 from humans to …

[HTML][HTML] SARS-CoV-2 infection dynamics and genomic surveillance to detect variants in wastewater–a longitudinal study in Bengaluru, India

S Lamba, S Ganesan, N Daroch, K Paul… - The Lancet Regional …, 2023 - thelancet.com
Background Environmental surveillance (ES) of a pathogen is crucial for understanding the
community load of disease. As an early warning system, ES for SARS-CoV-2 has …

Long-term monitoring of SARS-CoV-2 seroprevalence and variants in Ethiopia provides prediction for immunity and cross-immunity

S Merkt, S Ali, EK Gudina, W Adissu, A Gize… - Nature …, 2024 - nature.com
Under-reporting of COVID-19 and the limited information about circulating SARS-CoV-2
variants remain major challenges for many African countries. We analyzed SARS-CoV-2 …