Liquid–liquid phase separation in cellular signaling systems

PA Chong, JD Forman-Kay - Current opinion in structural biology, 2016 - Elsevier
Highlights•Protein liquid-liquid phase separation has implications for cellular
signaling.•Multivalent interactions give liquid, non-membrane-contained phase-separated …

speedingCARs: accelerating the engineering of CAR T cells by signaling domain shuffling and single-cell sequencing

R Castellanos-Rueda, RB Di Roberto… - Nature …, 2022 - nature.com
Chimeric antigen receptors (CARs) consist of an antigen-binding region fused to
intracellular signaling domains, enabling customized T cell responses against targets …

Asymmetric evolution of protein domains in the leucine-rich repeat receptor-like kinase family of plant signaling proteins

J Man, TA Harrington, K Lally… - Molecular Biology and …, 2023 - academic.oup.com
The coding sequences of developmental genes are expected to be deeply conserved, with
cis-regulatory change driving the modulation of gene function. In contrast, proteins with roles …

Reconstruction of protein domain evolution using single-cell amplified genomes of uncultured choanoflagellates sheds light on the origin of animals

D López-Escardó, X Grau-Bové… - … of the Royal …, 2019 - royalsocietypublishing.org
Understanding the origins of animal multicellularity is a fundamental biological question.
Recent genome data have unravelled the role that co-option of pre-existing genes played in …

Computational approaches to macromolecular interactions in the cell

IA Vakser, EJ Deeds - Current opinion in structural biology, 2019 - Elsevier
Highlights•Structural modeling of a cell is an evolving strategic direction.•Experimental
techniques provide data and validation for the modeling.•Key modeling approaches to …

Control of primary metabolism by a virulence regulatory network promotes robustness in a plant pathogen

R Peyraud, L Cottret, L Marmiesse, S Genin - Nature Communications, 2018 - nature.com
Robustness is a key system-level property of living organisms to maintain their functions
while tolerating perturbations. We investigate here how a regulatory network controlling …

Functional trade-offs in promiscuous enzymes cannot be explained by intrinsic mutational robustness of the native activity

M Kaltenbach, S Emond, F Hollfelder, N Tokuriki - PLoS genetics, 2016 - journals.plos.org
The extent to which an emerging new function trades off with the original function is a key
characteristic of the dynamics of enzyme evolution. Various cases of laboratory evolution …

The interplay of structural and cellular biophysics controls clustering of multivalent molecules

A Chattaraj, M Youngstrom, LM Loew - Biophysical Journal, 2019 - cell.com
Dynamic molecular clusters are assembled through weak multivalent interactions and are
platforms for cellular functions, especially receptor-mediated signaling. Clustering is also a …

A topology framework for macromolecular complexes and condensates

M Heidari, D Moes, O Schullian, B Scalvini… - Nano Research, 2022 - Springer
Macromolecular assemblies such as protein complexes and protein/RNA condensates are
involved in most fundamental cellular processes. The arrangement of subunits within these …

Asymmetric evolution of protein domains in the leucine-rich repeat receptor-like kinase (LRR-RLK) family of plant developmental coordinators

J Man, T Harrington, K Lally, ME Bartlett - bioRxiv, 2023 - biorxiv.org
The coding sequences of developmental genes are expected to be conserved over deep
time, with cis-regulatory change driving the modulation of gene function. In contrast, proteins …