Defining clinically useful biomarkers of immune checkpoint inhibitors in solid tumours

AM Holder, A Dedeilia, K Sierra-Davidson… - Nature Reviews …, 2024 - nature.com
Although more than a decade has passed since the approval of immune checkpoint
inhibitors (ICIs) for the treatment of melanoma and non-small-cell lung, breast and …

Understudied proteins: opportunities and challenges for functional proteomics

G Kustatscher, T Collins, AC Gingras, T Guo… - Nature …, 2022 - nature.com
Most research aiming at understanding the molecular foundations of life and disease has
focused on a limited set of increasingly well-known proteins while the biological functions of …

Network-based machine learning approach to predict immunotherapy response in cancer patients

JH Kong, D Ha, J Lee, I Kim, M Park, SH Im… - Nature …, 2022 - nature.com
Immune checkpoint inhibitors (ICIs) have substantially improved the survival of cancer
patients over the past several years. However, only a minority of patients respond to ICI …

Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials

Y Zheng, Y Liu, J Yang, L Dong, R Zhang, S Tian… - Nature …, 2024 - nature.com
Abstract Characterization and integration of the genome, epigenome, transcriptome,
proteome and metabolome of different datasets is difficult owing to a lack of ground truth …

Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution

M Chan-Seng-Yue, JC Kim, GW Wilson, K Ng… - Nature …, 2020 - nature.com
Pancreatic adenocarcinoma presents as a spectrum of a highly aggressive disease in
patients. The basis of this disease heterogeneity has proved difficult to resolve due to poor …

The KEAP1-NRF2 system: a thiol-based sensor-effector apparatus for maintaining redox homeostasis

M Yamamoto, TW Kensler… - Physiological …, 2018 - journals.physiology.org
The Kelch-like ECH-associated protein 1-NF-E2-related factor 2 (KEAP1-NRF2) system
forms the major node of cellular and organismal defense against oxidative and electrophilic …

Pan-cancer analysis of whole genomes

Nature, 2020 - nature.com
Cancer is driven by genetic change, and the advent of massively parallel sequencing has
enabled systematic documentation of this variation at the whole-genome scale,–. Here we …

Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours

X Ma, YU Liu, Y Liu, LB Alexandrov, MN Edmonson… - Nature, 2018 - nature.com
Abstract Analysis of molecular aberrations across multiple cancer types, known as pan-
cancer analysis, identifies commonalities and differences in key biological processes that …

Integration of multiomics data with graph convolutional networks to identify new cancer genes and their associated molecular mechanisms

R Schulte-Sasse, S Budach, D Hnisz… - Nature Machine …, 2021 - nature.com
The increase in available high-throughput molecular data creates computational challenges
for the identification of cancer genes. Genetic as well as non-genetic causes contribute to …

[HTML][HTML] Genetic and functional drivers of diffuse large B cell lymphoma

A Reddy, J Zhang, NS Davis, AB Moffitt, CL Love… - Cell, 2017 - cell.com
Diffuse large B cell lymphoma (DLBCL) is the most common form of blood cancer and is
characterized by a striking degree of genetic and clinical heterogeneity. This heterogeneity …