cis-Regulatory Elements in Plant Development, Adaptation, and Evolution

AP Marand, AL Eveland, K Kaufmann… - Annual review of …, 2023 - annualreviews.org
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …

Genetic and molecular exploration of maize environmental stress resilience: Toward sustainable agriculture

Z Yang, Y Cao, Y Shi, F Qin, C Jiang, S Yang - Molecular Plant, 2023 - cell.com
Global climate change exacerbates the effects of environmental stressors, such as drought,
flooding, extreme temperatures, salinity, and alkalinity, on crop growth and grain yield …

Two haplotype-resolved, gap-free genome assemblies for Actinidia latifolia and Actinidia chinensis shed light on the regulatory mechanisms of vitamin C and sucrose …

X Han, Y Zhang, Q Zhang, N Ma, X Liu, W Tao, Z Lou… - Molecular Plant, 2023 - cell.com
Kiwifruit is a recently domesticated horticultural fruit crop with substantial economic and
nutritional value, especially because of the high content of vitamin C in its fruit. In this study …

Plants are intelligent, here's how

P Calvo, M Gagliano, GM Souza, A Trewavas - Annals of botany, 2020 - academic.oup.com
Hypotheses The drive to survive is a biological universal. Intelligent behaviour is usually
recognized when individual organisms including plants, in the face of fiercely competitive or …

[HTML][HTML] Integrating multi-omics data for crop improvement

F Scossa, S Alseekh, AR Fernie - Journal of plant physiology, 2021 - Elsevier
Our agricultural systems are now in urgent need to secure food for a growing world
population. To meet this challenge, we need a better characterization of plant genetic and …

Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis

L Shao, F **ng, C Xu, Q Zhang, J Che… - Proceedings of the …, 2019 - National Acad Sciences
Utilization of heterosis has greatly increased the productivity of many crops worldwide.
Although tremendous progress has been made in characterizing the genetic basis of …

Beyond Genomic Prediction: Combining Different Types of omics Data Can Improve Prediction of Hybrid Performance in Maize

TA Schrag, M Westhues, W Schipprack, F Seifert… - Genetics, 2018 - academic.oup.com
The ability to predict the agronomic performance of single-crosses with high precision is
essential for selecting superior candidates for hybrid breeding. With recent technological …

Transposon insertions regulate genome‐wide allele‐specific expression and underpin flower colour variations in apple (Malus spp.)

Y Tian, A Thrimawithana, T Ding, J Guo… - Plant Biotechnology …, 2022 - Wiley Online Library
Allele‐specific expression (ASE) can lead to phenotypic diversity and evolution. However,
the mechanisms regulating ASE are not well understood, particularly in woody perennial …

Genetic diversity of tomato response to heat stress at the QTL and transcriptome levels

E Bineau, I Diouf, Y Carretero, R Duboscq… - The Plant …, 2021 - Wiley Online Library
Tomato is a widely cultivated crop, which can grow in many environments. However,
temperature above 30° C impairs its reproduction, subsequently impacting fruit yield. We …

Prediction of conserved and variable heat and cold stress response in maize using cis-regulatory information

P Zhou, TA Enders, ZA Myers, E Magnusson… - The Plant …, 2022 - academic.oup.com
Abstract Changes in gene expression are important for responses to abiotic stress.
Transcriptome profiling of heat-or cold-stressed maize genotypes identifies many changes in …