Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases

OK Tørresen, B Star, P Mier… - Nucleic acids …, 2019 - academic.oup.com
The widespread occurrence of repetitive stretches of DNA in genomes of organisms across
the tree of life imposes fundamental challenges for sequencing, genome assembly, and …

Environmental effects of offshore produced water discharges: A review focused on the Norwegian continental shelf

J Beyer, A Goksøyr, DØ Hjermann… - Marine environmental …, 2020 - Elsevier
Produced water (PW), a large byproduct of offshore oil and gas extraction, is reinjected to
formations or discharged to the sea after treatment. The discharges contain dispersed crude …

Supergene origin and maintenance in Atlantic cod

M Matschiner, JMI Barth, OK Tørresen, B Star… - Nature Ecology & …, 2022 - nature.com
Supergenes are sets of genes that are inherited as a single marker and encode complex
phenotypes through their joint action. They are identified in an increasing number of …

[HTML][HTML] Major histocompatibility complex (MHC) genes and disease resistance in fish

T Yamaguchi, JM Dijkstra - Cells, 2019 - mdpi.com
Fascinating about classical major histocompatibility complex (MHC) molecules is their
polymorphism. The present study is a review and discussion of the fish MHC situation. The …

Stabilizing selection on Atlantic cod supergenes through a millennium of extensive exploitation

M Sodeland, S Jentoft, PE Jorde, M Mattingsdal… - Proceedings of the …, 2022 - pnas.org
Life on Earth has been characterized by recurring cycles of ecological stasis and disruption,
relating biological eras to geological and climatic transitions through the history of our …

Teleost genomic repeat landscapes in light of diversification rates and ecology

WB Reinar, OK Tørresen, AJ Nederbragt, M Matschiner… - Mobile DNA, 2023 - Springer
Repetitive DNA make up a considerable fraction of most eukaryotic genomes. In fish,
transposable element (TE) activity has coincided with rapid species diversification. Here, we …

The round goby genome provides insights into mechanisms that may facilitate biological invasions

I Adrian-Kalchhauser, A Blomberg, T Larsson… - BMC biology, 2020 - Springer
Background The invasive benthic round goby (Neogobius melanostomus) is the most
successful temperate invasive fish and has spread in aquatic ecosystems on both sides of …

Single-cell transcriptome profiling of immune cell repertoire of the Atlantic cod which naturally lacks the major histocompatibility class II system

NC Guslund, MH Solbakken, MSO Brieuc… - Frontiers in …, 2020 - frontiersin.org
The Atlantic cod's unusual immune system, entirely lacking the Major Histocompatibility
class II pathway, has prompted intriguing questions about what mechanisms are used to …

Genome-wide identification and analysis of NOD-like receptors and their potential roles in response to Edwardsiella tarda infection in black rockfish (Sebastes …

M Cao, X Yan, Q Li, Q Fu, N Yang, L Song, C Li - Aquaculture, 2021 - Elsevier
NLR (NOD-like receptor) is a large class of cytoplasmic family protein that belonging to the
pattern recognition receptors (PRRs), which exerts autoimmune activities by detecting …

A tale of two fish: Comparative transcriptomics of resistant and susceptible steelhead following exposure to Ceratonova shasta highlights differences in parasite …

DE Barrett, JL Bartholomew - PLoS One, 2021 - journals.plos.org
Diseases caused by myxozoan parasites represent a significant threat to the health of
salmonids in both the wild and aquaculture setting, and there are no effective therapeutants …