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Protein Data Bank (PDB): the single global macromolecular structure archive
Abstract The Protein Data Bank (PDB)––the single global repository of experimentally
determined 3D structures of biological macromolecules and their complexes––was …
determined 3D structures of biological macromolecules and their complexes––was …
Challenges and opportunities in cryo-EM single-particle analysis
D Lyumkis - Journal of Biological Chemistry, 2019 - ASBMB
Cryogenic electron microscopy (cryo-EM) enables structure determination of
macromolecular objects and their assemblies. Although the techniques have been …
macromolecular objects and their assemblies. Although the techniques have been …
EMPIAR: the electron microscopy public image archive
A Iudin, PK Korir, S Somasundharam… - Nucleic Acids …, 2023 - academic.oup.com
Public archiving in structural biology is well established with the Protein Data Bank (PDB;
wwPDB. org) catering for atomic models and the Electron Microscopy Data Bank (EMDB; …
wwPDB. org) catering for atomic models and the Electron Microscopy Data Bank (EMDB; …
Cryo-EM structures of SARS-CoV-2 spike without and with ACE2 reveal a pH-dependent switch to mediate endosomal positioning of receptor-binding domains
The SARS-CoV-2 spike employs mobile receptor-binding domains (RBDs) to engage the
human ACE2 receptor and to facilitate virus entry, which can occur through low-pH …
human ACE2 receptor and to facilitate virus entry, which can occur through low-pH …
Mechanism of an intramembrane chaperone for multipass membrane proteins
L Smalinskaitė, MK Kim, AJO Lewis, RJ Keenan… - Nature, 2022 - nature.com
Multipass membrane proteins play numerous roles in biology and include receptors,
transporters, ion channels and enzymes,. How multipass proteins are co-translationally …
transporters, ion channels and enzymes,. How multipass proteins are co-translationally …
[PDF][PDF] Real-space refinement in PHENIX for cryo-EM and crystallography
This article describes the implementation of real-space refinement in the phenix.
real_space_refine program from the PHENIX suite. The use of a simplified refinement target …
real_space_refine program from the PHENIX suite. The use of a simplified refinement target …
Protein Data Bank: the single global archive for 3D macromolecular structure data
Nucleic acids research, 2019 - academic.oup.com
Abstract The Protein Data Bank (PDB) is the single global archive of experimentally
determined three-dimensional (3D) structure data of biological macromolecules. Since …
determined three-dimensional (3D) structure data of biological macromolecules. Since …
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
Single-particle electron cryomicroscopy (cryo-EM) is a powerful method for determining the
structures of biological macromolecules. With automated microscopes, cryo-EM data can …
structures of biological macromolecules. With automated microscopes, cryo-EM data can …
[PDF][PDF] New tools for the analysis and validation of cryo-EM maps and atomic models
PV Afonine, BP Klaholz, NW Moriarty… - … Section D: Structural …, 2018 - journals.iucr.org
Recent advances in the field of electron cryomicroscopy (cryo-EM) have resulted in a rapidly
increasing number of atomic models of biomacromolecules that have been solved using this …
increasing number of atomic models of biomacromolecules that have been solved using this …
Lysosomal LAMP proteins regulate lysosomal pH by direct inhibition of the TMEM175 channel
Maintaining a highly acidic lysosomal pH is central to cellular physiology. Here, we use
functional proteomics, single-particle cryo-EM, electrophysiology, and in vivo imaging to …
functional proteomics, single-particle cryo-EM, electrophysiology, and in vivo imaging to …