WikiPathways: connecting communities

M Martens, A Ammar, A Riutta… - Nucleic acids …, 2021 - academic.oup.com
Abstract WikiPathways (https://www. wikipathways. org) is a biological pathway database
known for its collaborative nature and open science approaches. With the core idea of the …

[КНИГА][B] Knowledge graphs

D Fensel, U Simsek, K Angele, E Huaman, E Kärle… - 2020 - Springer
Smart speakers such as Alexa and Google Home introduced Artificial Intelligence (AI) in
millions soon billions of households, making AI an everyday experience. We can now look …

Evaluating FAIR maturity through a scalable, automated, community-governed framework

MD Wilkinson, M Dumontier, SA Sansone… - Scientific data, 2019 - nature.com
Transparent evaluations of FAIRness are increasingly required by a wide range of
stakeholders, from scientists to publishers, funding agencies and policy makers. We propose …

modEnrichr: a suite of gene set enrichment analysis tools for model organisms

MV Kuleshov, JEL Diaz, ZN Flamholz… - Nucleic acids …, 2019 - academic.oup.com
High-throughput experiments produce increasingly large datasets that are difficult to analyze
and integrate. While most data integration approaches focus on aligning metadata, data …

RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine

EC Wood, AK Glen, LG Kvarfordt, F Womack… - BMC …, 2022 - Springer
Background Biomedical translational science is increasingly using computational reasoning
on repositories of structured knowledge (such as UMLS, SemMedDB, ChEMBL, Reactome …

ROBOKOP KG and KGB: integrated knowledge graphs from federated sources

C Bizon, S Cox, J Balhoff, Y Kebede… - Journal of chemical …, 2019 - ACS Publications
A proliferation of data sources has led to the notional existence of an implicit Knowledge
Graph (KG) that contains vast amounts of biological knowledge contributed by distributed …

Easy web API development with SPARQL transformer

P Lisena, A Meroño-Peñuela, T Kuhn… - … semantic web conference, 2019 - Springer
In a document-based world as the one of Web APIs, the triple-based output of SPARQL
endpoints can be a barrier for developers who want to integrate Linked Data in their …

[HTML][HTML] Toolchains for interoperable BIM workflows in a web-based integration platform

P Hagedorn, M Block, S Zentgraf, K Sigalov, M König - Applied Sciences, 2022 - mdpi.com
The construction industry is characterized by the diversity of its processes, whereby persons
involved in changing project communities are confronted with a changing interplay of …

BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs

J Callaghan, CH Xu, J **n, MA Cano, A Riutta… - …, 2023 - academic.oup.com
Knowledge graphs are an increasingly common data structure for representing biomedical
information. These knowledge graphs can easily represent heterogeneous types of …