Mycobiome diversity: high-throughput sequencing and identification of fungi

RH Nilsson, S Anslan, M Bahram… - Nature Reviews …, 2019 - nature.com
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …

Basic concepts of microarrays and potential applications in clinical microbiology

MB Miller, YW Tang - Clinical microbiology reviews, 2009 - Am Soc Microbiol
The introduction of in vitro nucleic acid amplification techniques, led by real-time PCR, into
the clinical microbiology laboratory has transformed the laboratory detection of viruses and …

Time to initiation of fluconazole therapy impacts mortality in patients with candidemia: a multi-institutional study

KW Garey, M Rege, MP Pai, DE Mingo… - Clinical infectious …, 2006 - academic.oup.com
Background. Inadequate antimicrobial treatment is an independent determinant of hospital
mortality, and fungal bloodstream infections are among the types of infection with the highest …

A Photonic Crystal Protein Hydrogel Sensor for Candida albicans

Z Cai, DH Kwak, D Punihaole, Z Hong… - Angewandte Chemie …, 2015 - Wiley Online Library
We report two‐dimensional (2D) photonic crystal (PC) sensing materials that selectively
detect Candida albicans (C. albicans). These sensors utilize Concanavalin A (Con A) …

Development and clinical application of a panfungal PCR assay to detect and identify fungal DNA in tissue specimens

A Lau, S Chen, T Sorrell, D Carter, R Malik… - Journal of clinical …, 2007 - Am Soc Microbiol
Given the rise in the incidence of invasive fungal infections (IFIs) and the expanding
spectrum of fungal pathogens, early and accurate identification of the causative pathogen is …

Tolerance and biosorption of copper (Cu) and lead (Pb) by filamentous fungi isolated from a freshwater ecosystem

NL Iskandar, NAIM Zainudin, SG Tan - Journal of Environmental Sciences, 2011 - Elsevier
Filamentous fungi are able to accumulate significant amount of metals from their
environment. The potential of fungal biomass as agents for biosorption of heavy metals from …

Recent trends in molecular diagnostics of yeast infections: from PCR to NGS

T Gabaldón - FEMS Microbiology Reviews, 2019 - academic.oup.com
The incidence of opportunistic yeast infections in humans has been increasing over recent
years. These infections are difficult to treat and diagnose, in part due to the large number …

Yeast identification—past, present, and future methods

DH Pincus, S Orenga, S Chatellier - Medical mycology, 2007 - academic.oup.com
The focus of this review is the evolution of biochemical phenotypic yeast identification
methods with emphasis on conventional approaches, rapid screening tests, chromogenic …

Recent advances in molecular techniques for the identification of phytopathogenic fungi–a mini review

S Aslam, A Tahir, MF Aslam, MW Alam… - Journal of Plant …, 2017 - Taylor & Francis
ABSTRACT At present, 1.5 million species of fungi are estimated. Among these less than 5%
have been described. Many fungal species cause disease in plants. These diseases cause …

Adequacy of empirical antifungal therapy and effect on outcome among patients with invasive Candida species infections

MD Parkins, DM Sabuda, S Elsayed… - Journal of …, 2007 - academic.oup.com
Objectives Although inadequate antimicrobial therapy has been demonstrated in multiple
studies to increase the risk for death in bacterial infections, few data investigating the effect …