Chemically specific coarse‐graining of polymers: Methods and prospects

S Dhamankar, MA Webb - Journal of Polymer Science, 2021 - Wiley Online Library
Coarse‐grained (CG) modeling is an invaluable tool for the study of polymers and other soft
matter systems due to the span of spatiotemporal scales that typify their physics and …

Computational electrochemistry: prediction of liquid-phase reduction potentials

AV Marenich, J Ho, ML Coote, CJ Cramer… - Physical Chemistry …, 2014 - pubs.rsc.org
This article reviews recent developments and applications in the area of computational
electrochemistry. Our focus is on predicting the reduction potentials of electron transfer and …

Modeling and simulations of polymers: a roadmap

TE Gartner III, A Jayaraman - Macromolecules, 2019 - ACS Publications
Molecular modeling and simulations are invaluable tools for the polymer science and
engineering community. These computational approaches enable predictions and provide …

A review of multiscale computational methods in polymeric materials

A Gooneie, S Schuschnigg, C Holzer - Polymers, 2017 - mdpi.com
Polymeric materials display distinguished characteristics which stem from the interplay of
phenomena at various length and time scales. Further development of polymer systems …

Classical electrostatics for biomolecular simulations

GA Cisneros, M Karttunen, P Ren, C Sagui - Chemical reviews, 2014 - ACS Publications
Classical atomistic simulations, also known as molecular mechanics simulations, use simple
potential-energy functions to model molecular systems at the atomic level. In this …

On develo** coarse-grained models for biomolecular simulation: a review

S Riniker, JR Allison, WF van Gunsteren - … Chemistry Chemical Physics, 2012 - pubs.rsc.org
So-called coarse-grained models are a popular type of model for accessing long time scales
in simulations of biomolecular processes. Such models are coarse-grained with respect to …

Hamiltonian adaptive resolution simulation for molecular liquids

R Potestio, S Fritsch, P Espanol, R Delgado-Buscalioni… - Physical review …, 2013 - APS
Adaptive resolution schemes allow the simulation of a molecular fluid treating
simultaneously different subregions of the system at different levels of resolution. In this work …

Novel approaches to multiscale modelling in materials science

JA Elliott - International Materials Reviews, 2011 - Taylor & Francis
Computational modelling techniques are now widely employed in materials science, due to
recent advances in computing power and simulation methodologies, since they can enable …

Adaptive resolution molecular dynamics simulation through coupling<? format?> to an internal particle reservoir

S Fritsch, S Poblete, C Junghans, G Ciccotti… - Physical review …, 2012 - APS
For simulation studies of (macro) molecular liquids it would be of significant interest to be
able to adjust or increase the level of resolution within one region of space, while allowing …

[HTML][HTML] Coarse-grain modelling of protein–protein interactions

M Baaden, SJ Marrink - Current opinion in structural biology, 2013 - Elsevier
Highlights•Coarse graining allows to model multi-protein aggregates of very large
scale.•Knowledge-based approaches promise to improve protein–protein interface …