Probing the dynamic RNA structurome and its functions
RNA is a key regulator of almost every cellular process, and the structures adopted by RNA
molecules are thought to be central to their functions. The recent fast-paced evolution of high …
molecules are thought to be central to their functions. The recent fast-paced evolution of high …
The roles of structural dynamics in the cellular functions of RNAs
RNAs fold into 3D structures that range from simple helical elements to complex tertiary
structures and quaternary ribonucleoprotein assemblies. The functions of many regulatory …
structures and quaternary ribonucleoprotein assemblies. The functions of many regulatory …
RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)
Many biological processes are RNA-mediated, but higher-order structures for most RNAs
are unknown, which makes it difficult to understand how RNA structure governs function …
are unknown, which makes it difficult to understand how RNA structure governs function …
[HTML][HTML] RNA duplex map in living cells reveals higher-order transcriptome structure
RNA has the intrinsic property to base pair, forming complex structures fundamental to its
diverse functions. Here, we develop PARIS, a method based on reversible psoralen …
diverse functions. Here, we develop PARIS, a method based on reversible psoralen …
Enhancer RNAs and regulated transcriptional programs
A large portion of the human genome is transcribed into RNAs without known protein-coding
functions, far outnumbering coding transcription units. Extensive studies of long noncoding …
functions, far outnumbering coding transcription units. Extensive studies of long noncoding …
Mechanisms of long non-coding RNAs in mammalian nervous system development, plasticity, disease, and evolution
Only relatively recently has it become clear that mammalian genomes encode tens of
thousands of long non-coding RNAs (lncRNAs). A striking 40% of these are expressed …
thousands of long non-coding RNAs (lncRNAs). A striking 40% of these are expressed …
The integral role of RNA in stress granule formation and function
D Campos-Melo, ZCE Hawley… - Frontiers in Cell and …, 2021 - frontiersin.org
Stress granules (SGs) are phase-separated, membraneless, cytoplasmic ribonucleoprotein
(RNP) assemblies whose primary function is to promote cell survival by condensing …
(RNP) assemblies whose primary function is to promote cell survival by condensing …
Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis
Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE) chemistries exploit
small electrophilic reagents that react with 2′-hydroxyl groups to interrogate RNA structure …
small electrophilic reagents that react with 2′-hydroxyl groups to interrogate RNA structure …
RNA modifications and structures cooperate to guide RNA–protein interactions
An emerging body of evidence indicates that post-transcriptional gene regulation relies not
only on the sequence of mRNAs but also on their folding into intricate secondary structures …
only on the sequence of mRNAs but also on their folding into intricate secondary structures …
Techniques for investigating lncRNA transcript functions in neurodevelopment
T Srinivas, E Siqueira, S Guil - Molecular Psychiatry, 2024 - nature.com
Long noncoding RNAs (lncRNAs) are sequences of 200 nucleotides or more that are
transcribed from a large portion of the mammalian genome. While hypothesized to have a …
transcribed from a large portion of the mammalian genome. While hypothesized to have a …