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Principles of genetic circuit design
Cells navigate environments, communicate and build complex patterns by initiating gene
expression in response to specific signals. Engineers seek to harness this capability to …
expression in response to specific signals. Engineers seek to harness this capability to …
[HTML][HTML] Roles for microRNAs in conferring robustness to biological processes
MS Ebert, PA Sharp - Cell, 2012 - cell.com
Biological systems use a variety of mechanisms to maintain their functions in the face of
environmental and genetic perturbations. Increasing evidence suggests that, among their …
environmental and genetic perturbations. Increasing evidence suggests that, among their …
Overflow metabolism in Escherichia coli results from efficient proteome allocation
Overflow metabolism refers to the seemingly wasteful strategy in which cells use
fermentation instead of the more efficient respiration to generate energy, despite the …
fermentation instead of the more efficient respiration to generate energy, despite the …
Identification and consequences of miRNA–target interactions—beyond repression of gene expression
Comparative genomics analyses and high-throughput experimental studies indicate that a
microRNA (miRNA) binds to hundreds of sites across the transcriptome. Although the …
microRNA (miRNA) binds to hundreds of sites across the transcriptome. Although the …
Small RNAs in bacteria and archaea: who they are, what they do, and how they do it
Small RNAs are ubiquitously present regulators in all kingdoms of life. Most bacterial and
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …
[HTML][HTML] Regulation by small RNAs in bacteria: expanding frontiers
Research on the discovery and characterization of small, regulatory RNAs in bacteria has
exploded in recent years. These sRNAs act by base pairing with target mRNAs with which …
exploded in recent years. These sRNAs act by base pairing with target mRNAs with which …
Principles of gene regulation quantitatively connect DNA to RNA and proteins in bacteria
Protein concentrations are set by a complex interplay between gene-specific regulatory
processes and systemic factors, including cell volume and shared gene expression …
processes and systemic factors, including cell volume and shared gene expression …
Functional roles for noise in genetic circuits
The genetic circuits that regulate cellular functions are subject to stochastic fluctuations, or
'noise', in the levels of their components. Noise, far from just a nuisance, has begun to be …
'noise', in the levels of their components. Noise, far from just a nuisance, has begun to be …
A quasi-integral controller for adaptation of genetic modules to variable ribosome demand
The behavior of genetic circuits is often poorly predictable. A gene's expression level is not
only determined by the intended regulators, but also affected by changes in ribosome …
only determined by the intended regulators, but also affected by changes in ribosome …
MicroRNAs can generate thresholds in target gene expression
MicroRNAs (miRNAs) are short, highly conserved noncoding RNA molecules that repress
gene expression in a sequence-dependent manner. We performed single-cell …
gene expression in a sequence-dependent manner. We performed single-cell …