DNA nanostructures as programmable biomolecular scaffolds

YR Yang, Y Liu, H Yan - Bioconjugate chemistry, 2015 - ACS Publications
This Review focuses on how to use DNA nanostructures as scaffolds to organize biological
molecules. First, we introduce the use of structural DNA nanotechnology to engineer …

A trailing ribosome speeds up RNA polymerase at the expense of transcript fidelity via force and allostery

LM Wee, AB Tong, AJ Florez Ariza… - Cell, 2023 - cell.com
In prokaryotes, translation can occur on mRNA that is being transcribed in a process called
coupling. How the ribosome affects the RNA polymerase (RNAP) during coupling is not well …

Broadening the scope of sortagging

X Dai, A Böker, U Glebe - RSC advances, 2019 - pubs.rsc.org
Sortases are enzymes occurring in the cell wall of Gram-positive bacteria. Sortase A (SrtA),
the best studied sortase class, plays a key role in anchoring surface proteins with the …

Site‐specific protein labeling via sortase‐mediated transpeptidation

MWL Popp, JM Antos, HL Ploegh - Current protocols in protein …, 2009 - Wiley Online Library
Creation of functional protein bioconjugates demands methods for attaching a diverse array
of probes to target proteins with high specificity, under mild conditions. The sortase A …

Addressable configurations of DNA nanostructures for rewritable memory

AR Chandrasekaran, O Levchenko… - Nucleic Acids …, 2017 - academic.oup.com
DNA serves as nature's information storage molecule, and has been the primary focus of
engineered systems for biological computing and data storage. Here we combine recent …

DNA nanoswitches: a quantitative platform for gel-based biomolecular interaction analysis

MA Koussa, K Halvorsen, A Ward, WP Wong - Nature methods, 2015 - nature.com
We introduce a nanoscale experimental platform that enables kinetic and equilibrium
measurements of a wide range of molecular interactions using a gel electrophoresis …

Engineering DNA nanostructures to manipulate immune receptor signaling and immune cell fates

CY Tseng, WX Wang, TR Douglas… - Advanced Healthcare …, 2022 - Wiley Online Library
Immune cells sense, communicate, and logically integrate a multitude of environmental
signals to make important cell‐fate decisions and fulfill their effector functions. These …

[HTML][HTML] Manipulating enzymes properties with DNA nanostructures

A Jaekel, P Stegemann, B Saccà - Molecules, 2019 - mdpi.com
Nucleic acids and proteins are two major classes of biopolymers in living systems. Whereas
nucleic acids are characterized by robust molecular recognition properties, essential for the …

Flow‐based enzymatic ligation by sortase A

RL Policarpo, H Kang, X Liao, AE Rabideau… - Angewandte …, 2014 - Wiley Online Library
Sortase‐mediated ligation (sortagging) is a versatile, powerful strategy for protein
modification. Because the sortase reaction reaches equilibrium, a large excess of …

3D DNA origami nanoparticles: From basic design principles to emerging applications in soft matter and (bio‐) nanosciences

S Loescher, S Groeer, A Walther - … Chemie International Edition, 2018 - Wiley Online Library
Scaffold‐based lattice‐engineered 3D DNA origami is a powerful and versatile technique for
the rational design and build‐up of arbitrarily structured and monodisperse DNA‐based 3D …