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Machine learning in enzyme engineering
Enzyme engineering plays a central role in develo** efficient biocatalysts for
biotechnology, biomedicine, and life sciences. Apart from classical rational design and …
biotechnology, biomedicine, and life sciences. Apart from classical rational design and …
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals
Bgee is a database to retrieve and compare gene expression patterns in multiple animal
species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ …
species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ …
[PDF][PDF] Gene ontology: pitfalls, biases, and remedies
Abstract The Gene Ontology (GO) is a formidable resource, but there are several
considerations about it that are essential to understand the data and interpret it correctly …
considerations about it that are essential to understand the data and interpret it correctly …
Propagation, detection and correction of errors using the sequence database network
Nucleotide and protein sequences stored in public databases are the cornerstone of many
bioinformatics analyses. The records containing these sequences are prone to a wide range …
bioinformatics analyses. The records containing these sequences are prone to a wide range …
ECO, the Evidence & Conclusion Ontology: community standard for evidence information
Abstract The Evidence and Conclusion Ontology (ECO) contains terms (classes) that
describe types of evidence and assertion methods. ECO terms are used in the process of …
describe types of evidence and assertion methods. ECO terms are used in the process of …
Machine learning enables prediction of pyrrolysyl-tRNA synthetase substrate specificity
Knowledge about the substrate scope for a given enzyme is informative for elucidating
biochemical pathways and also for expanding applications of the enzyme. However, no …
biochemical pathways and also for expanding applications of the enzyme. However, no …
Homology modeling in drug discovery-an update on the last decade
Background: The continual evolution of the world is closely chaperoned by the emergence
of deadly diseases, which presents itself at every turn thus determining the 3D structure of a …
of deadly diseases, which presents itself at every turn thus determining the 3D structure of a …
Functional annotations of paralogs: a blessing and a curse
R Zallot, KJ Harrison, B Kolaczkowski… - Life, 2016 - mdpi.com
Gene duplication followed by mutation is a classic mechanism of neofunctionalization,
producing gene families with functional diversity. In some cases, a single point mutation is …
producing gene families with functional diversity. In some cases, a single point mutation is …
Molecular interaction studies of Deguelin and its derivatives with Cyclin D1 and Cyclin E in cancer cell signaling pathway: The computational approach
Deguelin is a major active ingredient and principal component in several plants and it is a
potential molecule to target proteins of cancer cell signaling pathway. As a complex natural …
potential molecule to target proteins of cancer cell signaling pathway. As a complex natural …
Transcriptome signatures in the brain of a migratory songbird
Most of the birds's adaptations for migration have a neuroendocrine origin, triggered by
changes in photoperiod and the patterns of Earth's magnetic field. Migration …
changes in photoperiod and the patterns of Earth's magnetic field. Migration …