Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
Functional horizontal gene transfer from bacteria to eukaryotes
Bacteria influence eukaryotic biology as parasitic, commensal or beneficial symbionts. Aside
from these organismal interactions, bacteria have also been important sources of new …
from these organismal interactions, bacteria have also been important sources of new …
Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae …
Understanding of the phylogeny and interrelationships of the genera within the order
'Enterobacteriales' has proven difficult using the 16S rRNA gene and other single-gene or …
'Enterobacteriales' has proven difficult using the 16S rRNA gene and other single-gene or …
A rooted phylogeny resolves early bacterial evolution
INTRODUCTION Bacteria are the most diverse and abundant cellular organisms on Earth,
and in recent years environmental genomics has revealed the existence of an enormous …
and in recent years environmental genomics has revealed the existence of an enormous …
Divergent evolutionary trajectories of bryophytes and tracheophytes from a complex common ancestor of land plants
The origin of plants and their colonization of land fundamentally transformed the terrestrial
environment. Here we elucidate the basis of this formative episode in Earth history through …
environment. Here we elucidate the basis of this formative episode in Earth history through …
Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes
M García-López, JP Meier-Kolthoff, BJ Tindall… - Frontiers in …, 2019 - frontiersin.org
Although considerable progress has been made in recent years regarding the classification
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …
Insights into the phylogeny and coding potential of microbial dark matter
Genome sequencing enhances our understanding of the biological world by providing
blueprints for the evolutionary and functional diversity that shapes the biosphere. However …
blueprints for the evolutionary and functional diversity that shapes the biosphere. However …
Phylogenomics provides robust support for a two-domains tree of life
Hypotheses about the origin of eukaryotic cells are classically framed within the context of a
universal 'tree of life'based on conserved core genes. Vigorous ongoing debate about …
universal 'tree of life'based on conserved core genes. Vigorous ongoing debate about …
Weighted parsimony outperforms other methods of phylogenetic inference under models appropriate for morphology
One of the lasting controversies in phylogenetic inference is the degree to which specific
evolutionary models should influence the choice of methods. Model‐based approaches to …
evolutionary models should influence the choice of methods. Model‐based approaches to …
Lipid biomarkers: molecular tools for illuminating the history of microbial life
Fossilized lipids preserved in sedimentary rocks offer singular insights into the Earth's
palaeobiology. These 'biomarkers' encode information pertaining to the oxygenation of the …
palaeobiology. These 'biomarkers' encode information pertaining to the oxygenation of the …