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Approximation and inference methods for stochastic biochemical kinetics—a tutorial review
Stochastic fluctuations of molecule numbers are ubiquitous in biological systems. Important
examples include gene expression and enzymatic processes in living cells. Such systems …
examples include gene expression and enzymatic processes in living cells. Such systems …
Quantum approximate optimization algorithm: Performance, mechanism, and implementation on near-term devices
The quantum approximate optimization algorithm (QAOA) is a hybrid quantum-classical
variational algorithm designed to tackle combinatorial optimization problems. Despite its …
variational algorithm designed to tackle combinatorial optimization problems. Despite its …
Dagma: Learning dags via m-matrices and a log-determinant acyclicity characterization
The combinatorial problem of learning directed acyclic graphs (DAGs) from data was
recently framed as a purely continuous optimization problem by leveraging a differentiable …
recently framed as a purely continuous optimization problem by leveraging a differentiable …
Light emission from strongly driven many-body systems
Strongly driven systems of emitters offer an attractive source of light over broad spectral
ranges up to the X-ray region. A key limitation of these systems is that the light they emit is …
ranges up to the X-ray region. A key limitation of these systems is that the light they emit is …
Coherent state based solutions of the time-dependent Schrödinger equation: hierarchy of approximations to the variational principle
M Werther, SL Choudhury… - International Reviews in …, 2021 - Taylor & Francis
In this review, we give a comprehensive comparison of the most widely used coherent state
(CS) based methods to solve the time-dependent Schrödinger equation (TDSE). Starting …
(CS) based methods to solve the time-dependent Schrödinger equation (TDSE). Starting …
Heat kernel based community detection
The heat kernel is a type of graph diffusion that, like the much-used personalized PageRank
diffusion, is useful in identifying a community nearby a starting seed node. We present the …
diffusion, is useful in identifying a community nearby a starting seed node. We present the …
XTrace: Making the Most of Every Sample in Stochastic Trace Estimation
The implicit trace estimation problem asks for an approximation of the trace of a square
matrix, accessed via matrix-vector products (matvecs). This paper designs new randomized …
matrix, accessed via matrix-vector products (matvecs). This paper designs new randomized …
Prominent quantum many-body scars in a truncated Schwinger model
The high level of control and precision achievable in current synthetic quantum matter
setups has enabled first attempts at quantum-simulating various intriguing phenomena in …
setups has enabled first attempts at quantum-simulating various intriguing phenomena in …
Inference and analysis of population-specific fine-scale recombination maps across 26 diverse human populations
JP Spence, YS Song - Science Advances, 2019 - science.org
Fine-scale rates of meiotic recombination vary by orders of magnitude across the genome
and differ between species and even populations. Studying cross-population differences …
and differ between species and even populations. Studying cross-population differences …
Neural marching cubes
We introduce Neural Marching Cubes, a data-driven approach for extracting a triangle mesh
from a discretized implicit field. We base our meshing approach on Marching Cubes (MC) …
from a discretized implicit field. We base our meshing approach on Marching Cubes (MC) …