From the regulation of peptidoglycan synthesis to bacterial growth and morphology

A Typas, M Banzhaf, CA Gross… - Nature Reviews …, 2012 - nature.com
How bacteria grow and divide while retaining a defined shape is a fundamental question in
microbiology, but technological advances are now driving a new understanding of how the …

Global genetic networks and the genotype-to-phenotype relationship

M Costanzo, E Kuzmin, J Van Leeuwen, B Mair… - Cell, 2019 - cell.com
Genetic interactions identify combinations of genetic variants that im**e on phenotype.
With whole-genome sequence information available for thousands of individuals within a …

Construction and analysis of two genome-scale deletion libraries for Bacillus subtilis

BM Koo, G Kritikos, JD Farelli, H Todor, K Tong… - Cell systems, 2017 - cell.com
A systems-level understanding of Gram-positive bacteria is important from both an
environmental and health perspective and is most easily obtained when high-quality …

Inhibition of CRISPR-Cas9 with bacteriophage proteins

BJ Rauch, MR Silvis, JF Hultquist, CS Waters… - Cell, 2017 - cell.com
Bacterial CRISPR-Cas systems utilize sequence-specific RNA-guided nucleases to defend
against bacteriophage infection. As a countermeasure, numerous phages are known that …

[HTML][HTML] Antimicrobial interactions: mechanisms and implications for drug discovery and resistance evolution

T Bollenbach - Current opinion in microbiology, 2015 - Elsevier
Highlights•Combinations of antibiotics lead to synergistic and antagonistic drug
interactions.•The underlying mechanisms of drug interactions can be elucidated using novel …

Phenotypic landscape of a bacterial cell

RJ Nichols, S Sen, YJ Choo, P Beltrao, M Zietek… - Cell, 2011 - cell.com
The explosion of sequence information in bacteria makes develo** high-throughput, cost-
effective approaches to matching genes with phenotypes imperative. Using E. coli as proof …

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms

T Van Opijnen, KL Bodi, A Camilli - Nature methods, 2009 - nature.com
Biological pathways are structured in complex networks of interacting genes. Solving the
architecture of such networks may provide valuable information, such as how …

CRISPRi–TnSeq maps genome-wide interactions between essential and non-essential genes in bacteria

B Jana, X Liu, J Dénéréaz, H Park, D Leshchiner… - Nature …, 2024 - nature.com
Genetic interactions identify functional connections between genes and pathways,
establishing gene functions or druggable targets. Here we use CRISPRi–TnSeq, CRISPRi …

Differential network biology

T Ideker, NJ Krogan - Molecular systems biology, 2012 - embopress.org
Protein and genetic interaction maps can reveal the overall physical and functional
landscape of a biological system. To date, these interaction maps have typically been …

Predicting cancer-specific vulnerability via data-driven detection of synthetic lethality

L Jerby-Arnon, N Pfetzer, YY Waldman, L McGarry… - Cell, 2014 - cell.com
Synthetic lethality occurs when the inhibition of two genes is lethal while the inhibition of
each single gene is not. It can be harnessed to selectively treat cancer by identifying inactive …