Machine learning force fields

OT Unke, S Chmiela, HE Sauceda… - Chemical …, 2021 - ACS Publications
In recent years, the use of machine learning (ML) in computational chemistry has enabled
numerous advances previously out of reach due to the computational complexity of …

Utilizing graph machine learning within drug discovery and development

T Gaudelet, B Day, AR Jamasb, J Soman… - Briefings in …, 2021 - academic.oup.com
Graph machine learning (GML) is receiving growing interest within the pharmaceutical and
biotechnology industries for its ability to model biomolecular structures, the functional …

Contrastive multi-view representation learning on graphs

K Hassani, AH Khasahmadi - International conference on …, 2020 - proceedings.mlr.press
We introduce a self-supervised approach for learning node and graph level representations
by contrasting structural views of graphs. We show that unlike visual representation learning …

Learning convolutional neural networks for graphs

M Niepert, M Ahmed, K Kutzkov - … conference on machine …, 2016 - proceedings.mlr.press
Numerous important problems can be framed as learning from graph data. We propose a
framework for learning convolutional neural networks for arbitrary graphs. These graphs …

Deepwalk: Online learning of social representations

B Perozzi, R Al-Rfou, S Skiena - Proceedings of the 20th ACM SIGKDD …, 2014 - dl.acm.org
We present DeepWalk, a novel approach for learning latent representations of vertices in a
network. These latent representations encode social relations in a continuous vector space …

Data augmentation for deep graph learning: A survey

K Ding, Z Xu, H Tong, H Liu - ACM SIGKDD Explorations Newsletter, 2022 - dl.acm.org
Graph neural networks, a powerful deep learning tool to model graph-structured data, have
demonstrated remarkable performance on numerous graph learning tasks. To address the …

Diffusion improves graph learning

J Gasteiger, S Weißenberger… - Advances in neural …, 2019 - proceedings.neurips.cc
Graph convolution is the core of most Graph Neural Networks (GNNs) and usually
approximated by message passing between direct (one-hop) neighbors. In this work, we …

The graph neural network model

F Scarselli, M Gori, AC Tsoi… - IEEE transactions on …, 2008 - ieeexplore.ieee.org
Many underlying relationships among data in several areas of science and engineering, eg,
computer vision, molecular chemistry, molecular biology, pattern recognition, and data …

Learning with kernels: support vector machines, regularization, optimization, and beyond

B Schölkopf - 2002 - direct.mit.edu
A comprehensive introduction to Support Vector Machines and related kernel methods. In
the 1990s, a new type of learning algorithm was developed, based on results from statistical …

Laplacian eigenmaps for dimensionality reduction and data representation

M Belkin, P Niyogi - Neural computation, 2003 - ieeexplore.ieee.org
One of the central problems in machine learning and pattern recognition is to develop
appropriate representations for complex data. We consider the problem of constructing a …