Bacterial–fungal interactions: ecology, mechanisms and challenges

A Deveau, G Bonito, J Uehling… - FEMS microbiology …, 2018 - academic.oup.com
Fungi and bacteria are found living together in a wide variety of environments. Their
interactions are significant drivers of many ecosystem functions and are important for the …

The fungal tree of life: from molecular systematics to genome‐scale phylogenies

JW Spatafora, MC Aime, IV Grigoriev… - The fungal …, 2017 - Wiley Online Library
In 1996 the genome of Saccharomyces cerevisiae was published and marked the beginning
of a new era in fungal biology (1). Since then, rapid advancements in both sequencing …

Fungal diversity notes 1036–1150: taxonomic and phylogenetic contributions on genera and species of fungal taxa

KD Hyde, DS Tennakoon, R Jeewon, DJ Bhat… - Fungal diversity, 2019 - Springer
This article is the tenth series of the Fungal Diversity Notes, where 114 taxa distributed in
three phyla, ten classes, 30 orders and 53 families are described and illustrated. Taxa …

Effect of high soil C/N ratio and nitrogen limitation caused by the long-term combined organic-inorganic fertilization on the soil microbial community structure and its …

J Cui, R Zhu, X Wang, X Xu, C Ai, P He, G Liang… - Journal of …, 2022 - Elsevier
The application of organic fertilizers, such as straw and manure, is an efficient approach to
maintain soil productivity. However, the effect of these organic fertilizers on soil microbial …

Mortierella elongata's roles in organic agriculture and crop growth promotion in a mineral soil

F Li, L Chen, M Redmile‐Gordon… - Land Degradation & …, 2018 - Wiley Online Library
The addition of organic amendments contributes substantially to improvements in soil quality
and prevents soil degradation. However, very little is known about the responses of …

Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling

R López-Mondéjar, V Brabcová, M Štursová… - The ISME …, 2018 - academic.oup.com
Forest soils represent important terrestrial carbon (C) pools where C is primarily fixed in the
plant-derived biomass but it flows further through the biomass of fungi and bacteria before it …

Ecological network analysis reveals distinctive microbial modules associated with heavy metal contamination of abandoned mine soils in Korea

SJ Chun, YJ Kim, Y Cui, KH Nam - Environmental Pollution, 2021 - Elsevier
Heavy metal pollution in soil around abandoned mine sites is one of the most critical
environmental issues worldwide. Soil microbes form complex communities and perform …

Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina

E Morin, S Miyauchi, H San Clemente… - New …, 2019 - Wiley Online Library
Glomeromycotina is a lineage of early diverging fungi that establish arbuscular mycorrhizal
(AM) symbiosis with land plants. Despite their major ecological role, the genetic basis of …

Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics

N Vandepol, J Liber, A Desirò, H Na, M Kennedy… - Fungal Diversity, 2020 - Springer
Early efforts to classify Mortierellaceae were based on macro-and micromorphology, but
sequencing and phylogenetic studies with ribosomal DNA (rDNA) markers have …

Fertilizing-induced alterations of microbial functional profiles in soil nitrogen cycling closely associate with crop yield

R Li, C Ren, L Wu, X Zhang, X Mao, Z Fan, W Cui… - Environmental …, 2023 - Elsevier
Fertilization and rhizosphere selection are key regulators for soil nitrogen (N) cycling and
microbiome. Thus, clarifying how the overall N cycling processes and soil microbiome …