Protein analysis by shotgun/bottom-up proteomics

Y Zhang, BR Fonslow, B Shan, MC Baek… - Chemical …, 2013 - ACS Publications
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

A systematic approach to protein glycosylation analysis: a path through the maze

K Marino, J Bones, JJ Kattla, PM Rudd - Nature chemical biology, 2010 - nature.com
Protein glycosylation is an important post-translational modification. It is a feature that
enhances the functional diversity of proteins and influences their biological activity. A wide …

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

JEP Syka, JJ Coon, MJ Schroeder… - Proceedings of the …, 2004 - pnas.org
Peptide sequence analysis using a combination of gas-phase ion/ion chemistry and tandem
mass spectrometry (MS/MS) is demonstrated. Singly charged anthracene anions transfer an …

GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans

A Ceroni, K Maass, H Geyer, R Geyer… - Journal of proteome …, 2008 - ACS Publications
Mass spectrometry is the main analytical technique currently used to address the challenges
of glycomics as it offers unrivalled levels of sensitivity and the ability to handle complex …

Complete protein characterization using top-down mass spectrometry and ultraviolet photodissociation

JB Shaw, W Li, DD Holden, Y Zhang… - Journal of the …, 2013 - ACS Publications
The top-down approach to proteomics offers compelling advantages due to the potential to
provide complete characterization of protein sequence and post-translational modifications …

High-throughput proteomics

Z Zhang, S Wu, DL Stenoien… - Annual review of …, 2014 - annualreviews.org
Mass spectrometry (MS)–based high-throughput proteomics is the core technique for large-
scale protein characterization. Due to the extreme complexity of proteomes, sophisticated …

Ion activation methods for tandem mass spectrometry

L Sleno, DA Volmer - Journal of mass spectrometry, 2004 - Wiley Online Library
This tutorial presents the most common ion activation techniques employed in tandem mass
spectrometry. In‐source fragmentation and metastable ion decompositions, as well as the …

[HTML][HTML] Challenges of glycosylation analysis and control: an integrated approach to producing optimal and consistent therapeutic drugs

P Zhang, S Woen, T Wang, B Liau, S Zhao, C Chen… - Drug discovery today, 2016 - Elsevier
Highlights•Glycosylation of antibodies has a range of effects on their binding and effector
functions.•Regulatory agencies require stringent glycan analysis to ensure safety and …

High-resolution mass spectrometers

AG Marshall, CL Hendrickson - Annu. Rev. Anal. Chem., 2008 - annualreviews.org
Over the past decade, mass spectrometry has been revolutionized by access to instruments
of increasingly high mass-resolving power. For small molecules up to∼ 400 Da (eg, drugs …

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

NM Griffin, J Yu, F Long, P Oh, S Shore, Y Li… - Nature …, 2010 - nature.com
Replicate mass spectrometry (MS) measurements and the use of multiple analytical
methods can greatly expand the comprehensiveness of shotgun proteomic profiling of …