[HTML][HTML] Impact of vaccination and non-pharmaceutical interventions on SARS-CoV-2 dynamics in Switzerland

AJ Shattock, EA Le Rutte, RP Dünner, S Sen, SL Kelly… - Epidemics, 2022 - Elsevier
Background As vaccination coverage against SARS-CoV-2 increases amidst the emergence
and spread of more infectious and potentially more deadly viral variants, decisions on timing …

Strategy and performance evaluation of low-frequency variant calling for SARS-CoV-2 using targeted deep Illumina sequencing

LAE Van Poelvoorde, T Delcourt, W Coucke… - Frontiers in …, 2021 - frontiersin.org
The ongoing COVID-19 pandemic, caused by SARS-CoV-2, constitutes a tremendous
global health issue. Continuous monitoring of the virus has become a cornerstone to make …

[HTML][HTML] Replacement of SARS-CoV-2 strains with variants carrying N501Y and L452R mutations in Japan: an epidemiological surveillance assessment

Y Kobayashi, T Arashiro, M Otsuka… - Western Pacific …, 2022 - ncbi.nlm.nih.gov
Objective Monitoring the prevalence of severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2) variants is important due to concerns regarding infectivity, transmissibility …

[PDF][PDF] Exploring the added value of Whole Genome Sequencing in routine and pandemic viral surveillance

L Van Poelvoorde - 2023 - backoffice.biblio.ugent.be
Whole genome sequencing (WGS) has opened up a lot of new possibilities for virus
surveillance, however, many applications have remained unexploited in the context of …

COVIDHunter: An Accurate, Flexible, and Environment-Aware Open-Source COVID-19 Outbreak Simulation Model

M Alser, JS Kim, NA Alserr, SW Tell, O Mutlu - arxiv preprint arxiv …, 2021 - arxiv.org
Background: Early detection and isolation of COVID-19 patients are essential for successful
implementation of mitigation strategies and eventually curbing the disease spread. With a …